Mercurial > repos > mingchen0919 > aurora_htseq_site

diff htseq_count.sh @ 0:0bfeaf18a871 draft

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planemo upload
author mingchen0919
date Wed, 07 Mar 2018 08:45:02 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/htseq_count.sh	Wed Mar 07 08:45:02 2018 -0500
@@ -0,0 +1,20 @@
+Rscript '${__tool_directory__}/htseq_count_render.R'
+
+			-e $echo
+			-o $report
+			-d $report.files_path
+			-s $sink_message
+			-t '${__tool_directory__}'
+			
+			-A '$alignment_files'
+			-B '$sample_names'
+			-G $gff
+			-f $format
+			-r $order
+			-S $stranded
+			-a $minaqual
+			-T $feature_type
+			-i $idattr
+			-m $mode
+			-c $count
+			-O $count_rdata
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