Mercurial > repos > mingchen0919 > aurora_fastqc_site
changeset 6:53b851fa90de draft
2.1.1
| author | mingchen0919 |
|---|---|
| date | Tue, 13 Mar 2018 11:33:13 -0400 |
| parents | 0848b008f0d7 |
| children | 3f92c10de274 |
| files | 01_evaluation_overview.Rmd fastqc_site.xml |
| diffstat | 2 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/01_evaluation_overview.Rmd Tue Mar 13 11:10:28 2018 -0400 +++ b/01_evaluation_overview.Rmd Tue Mar 13 11:33:13 2018 -0400 @@ -23,6 +23,7 @@ cp ${X_r} ${X_d}/read_1.fq cp ${X_R} ${X_d}/read_2.fq +mkdir -p read_1 read_2 cat >temp.sh <<EOL fastqc \\ -q \\
--- a/fastqc_site.xml Tue Mar 13 11:10:28 2018 -0400 +++ b/fastqc_site.xml Tue Mar 13 11:33:13 2018 -0400 @@ -8,7 +8,7 @@ <requirement type="package" version="1.20.0">r-getopt</requirement> <requirement type="package" version="1.6">r-rmarkdown</requirement> <requirement type="package" version="1.8.4">r-plyr</requirement> - <requirement type="package" version="1.1.0">r-stringr</requirement> + <requirement type="package" version="1.2.0">r-stringr</requirement> <requirement type="package" version="0.2">r-dt</requirement> <requirement type="package" version="1.4.2">r-reshape2</requirement> <requirement type="package" version="4.5.6">r-plotly</requirement>