# HG changeset patch
# User mingchen0919
# Date 1520955193 14400
# Node ID 53b851fa90ded6f2031d68442504aa1a93a7af13
# Parent  0848b008f0d7725c97290676814ecb2b272278af
2.1.1

diff -r 0848b008f0d7 -r 53b851fa90de 01_evaluation_overview.Rmd
--- a/01_evaluation_overview.Rmd	Tue Mar 13 11:10:28 2018 -0400
+++ b/01_evaluation_overview.Rmd	Tue Mar 13 11:33:13 2018 -0400
@@ -23,6 +23,7 @@
 cp ${X_r} ${X_d}/read_1.fq
 cp ${X_R} ${X_d}/read_2.fq
 
+mkdir -p read_1 read_2
 cat >temp.sh <<EOL
 fastqc \\
   -q \\
diff -r 0848b008f0d7 -r 53b851fa90de fastqc_site.xml
--- a/fastqc_site.xml	Tue Mar 13 11:10:28 2018 -0400
+++ b/fastqc_site.xml	Tue Mar 13 11:33:13 2018 -0400
@@ -8,7 +8,7 @@
         <requirement type="package" version="1.20.0">r-getopt</requirement>
         <requirement type="package" version="1.6">r-rmarkdown</requirement>
         <requirement type="package" version="1.8.4">r-plyr</requirement>
-        <requirement type="package" version="1.1.0">r-stringr</requirement>
+        <requirement type="package" version="1.2.0">r-stringr</requirement>
         <requirement type="package" version="0.2">r-dt</requirement>
         <requirement type="package" version="1.4.2">r-reshape2</requirement>
         <requirement type="package" version="4.5.6">r-plotly</requirement>