Mercurial > repos > mingchen0919 > aurora_deseq2_site

changeset 3:1faa864c0839 draft

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update 2.2.0
author mingchen0919
date Fri, 09 Mar 2018 09:06:06 -0500
parents 706ecfe0bac3
children b69138a05735
files deseq2_site.sh deseq2_site.xml deseq2_site_site.yml
diffstat 3 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/deseq2_site.sh	Fri Mar 09 08:53:17 2018 -0500
+++ b/deseq2_site.sh	Fri Mar 09 09:06:06 2018 -0500
@@ -1,4 +1,4 @@
-Rscript '${__tool_directory__}/deseq2_render.R'
+Rscript '${__tool_directory__}/deseq2_site_render.R'
 
   -e $echo
   -o $report
--- a/deseq2_site.xml	Fri Mar 09 08:53:17 2018 -0500
+++ b/deseq2_site.xml	Fri Mar 09 09:06:06 2018 -0500
@@ -14,7 +14,7 @@
         <regex match="XXX" source="stderr" level="warning"
                description="Check the warnings_and_errors.txt file for more details."/>
     </stdio>
-    <command><![CDATA[Rscript '${__tool_directory__}/deseq2_render.R'
+    <command><![CDATA[Rscript '${__tool_directory__}/deseq2_site_render.R'
 
   -e $echo
   -o $report
--- a/deseq2_site_site.yml	Fri Mar 09 08:53:17 2018 -0500
+++ b/deseq2_site_site.yml	Fri Mar 09 09:06:06 2018 -0500
@@ -18,6 +18,7 @@
             - text: "Heatmap"
               href: deseq2_04_heatmap.html
             - text: "PCA plot"
+              href: deseq2_05_pca.html
 output:
   html_document:
     theme: cosmo