# HG changeset patch
# User mingchen0919
# Date 1520604366 18000
# Node ID 1faa864c0839e20f68407e9f9540649fb0b0db96
# Parent  706ecfe0bac3405c776ea417e7ca535003ad7234
update 2.2.0

diff -r 706ecfe0bac3 -r 1faa864c0839 deseq2_site.sh
--- a/deseq2_site.sh	Fri Mar 09 08:53:17 2018 -0500
+++ b/deseq2_site.sh	Fri Mar 09 09:06:06 2018 -0500
@@ -1,4 +1,4 @@
-Rscript '${__tool_directory__}/deseq2_render.R'
+Rscript '${__tool_directory__}/deseq2_site_render.R'
 
   -e $echo
   -o $report
diff -r 706ecfe0bac3 -r 1faa864c0839 deseq2_site.xml
--- a/deseq2_site.xml	Fri Mar 09 08:53:17 2018 -0500
+++ b/deseq2_site.xml	Fri Mar 09 09:06:06 2018 -0500
@@ -14,7 +14,7 @@
         <regex match="XXX" source="stderr" level="warning"
                description="Check the warnings_and_errors.txt file for more details."/>
     </stdio>
-    <command><![CDATA[Rscript '${__tool_directory__}/deseq2_render.R'
+    <command><![CDATA[Rscript '${__tool_directory__}/deseq2_site_render.R'
 
   -e $echo
   -o $report
diff -r 706ecfe0bac3 -r 1faa864c0839 deseq2_site_site.yml
--- a/deseq2_site_site.yml	Fri Mar 09 08:53:17 2018 -0500
+++ b/deseq2_site_site.yml	Fri Mar 09 09:06:06 2018 -0500
@@ -18,6 +18,7 @@
             - text: "Heatmap"
               href: deseq2_04_heatmap.html
             - text: "PCA plot"
+              href: deseq2_05_pca.html
 output:
   html_document:
     theme: cosmo