Mercurial > repos > melissacline > ucsc_xena_platform
changeset 25:8669770eb1cc
Uploaded, to try to fix a merge problem.
| author | melissacline |
|---|---|
| date | Tue, 02 Jun 2015 19:17:41 -0400 |
| parents | 975abd814626 |
| children | 8666fd3e8e4f |
| files | ucsc_xenabrowser.xml |
| diffstat | 1 files changed, 25 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ucsc_xenabrowser.xml Tue Jun 02 19:17:41 2015 -0400 @@ -0,0 +1,25 @@ +<?xml version="1.0"?> +<!-- + If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in + the initial response. If value of 'URL_method' is 'post', any additional params coming back in the + initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. +--> +<tool name="UCSC Xena Browser" id="ucsc_xenabrowser" tool_type="data_source"> + <description>Run the UCSC Xena Browser as a Galaxy tool.</description> + <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command> + <inputs action="https://genome-cancer.ucsc.edu/proj/site/xena/heatmap/" check_values="false" method="get"> + <display>go to UCSC Xena Browser $GALAXY_URL</display> + <param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> + <param name="tool_id" type="hidden" value="ucsc_xenabrowser" /> + </inputs> + <request_param_translation> + <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" /> + <request_param galaxy_name="URL" remote_name="URL" missing="" /> + </request_param_translation> + <uihints minwidth="800"/> + <outputs> + <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" /> + <data name="clinical" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' clinical'"/> + </outputs> + <options sanitize="False" refresh="True"/> +</tool>