Mercurial > repos > melissacline > ucsc_xena_platform
changeset 23:7c49d9f8687a
Deleted selected files, clearing up a merge problem.
| author | melissacline |
|---|---|
| date | Tue, 02 Jun 2015 19:16:42 -0400 |
| parents | fcef0cd87106 |
| children | 975abd814626 |
| files | ucsc_xena_datapages.xml ucsc_xena_hub.xml ucsc_xenabrowser.xml xena.jar |
| diffstat | 4 files changed, 0 insertions(+), 73 deletions(-) [+] |
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--- a/ucsc_xena_datapages.xml Tue Jun 02 19:11:39 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,24 +0,0 @@ -<?xml version="1.0"?> -<!-- - If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in - the initial response. If value of 'URL_method' is 'post', any additional params coming back in the - initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. ---> -<tool name="Explore Data in Xena" id="ucsc_xenadatapages" tool_type="data_source"> - <description>Browse the UCSC Xena Data Pages.</description> - <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command> - <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/datapages/" check_values="false" method="get"> - <display>Explore the data in Xena $GALAXY_URL</display> - <param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> - <param name="tool_id" type="hidden" value="ucsc_xenadatapages" /> - </inputs> - <request_param_translation> - <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" /> - <request_param galaxy_name="URL" remote_name="URL" missing="" /> - </request_param_translation> - <uihints minwidth="800"/> - <outputs> - <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" /> - </outputs> - <options sanitize="False" refresh="True"/> -</tool>
--- a/ucsc_xena_hub.xml Tue Jun 02 19:11:39 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,24 +0,0 @@ -<?xml version="1.0"?> -<!-- - If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in - the initial response. If value of 'URL_method' is 'post', any additional params coming back in the - initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. ---> -<tool name="Xena Data Hub" id="ucsc_xenadatahub" tool_type="data_source"> - <description>Select your Xena Data Hub</description> - <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command> - <inputs action="https://genome-cancer.ucsc.edu/proj/site/hgHeatmap-cavm/hub/" check_values="false" method="get"> - <display>Select your Xena Data Hub $GALAXY_URL</display> - <param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> - <param name="tool_id" type="hidden" value="ucsc_xenadatapages" /> - </inputs> - <request_param_translation> - <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" /> - <request_param galaxy_name="URL" remote_name="URL" missing="" /> - </request_param_translation> - <uihints minwidth="800"/> - <outputs> - <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" /> - </outputs> - <options sanitize="False" refresh="True"/> -</tool>
--- a/ucsc_xenabrowser.xml Tue Jun 02 19:11:39 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,25 +0,0 @@ -<?xml version="1.0"?> -<!-- - If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in - the initial response. If value of 'URL_method' is 'post', any additional params coming back in the - initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. ---> -<tool name="UCSC Xena Browser" id="ucsc_xenabrowser" tool_type="data_source"> - <description>Run the UCSC Xena Browser as a Galaxy tool.</description> - <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command> - <inputs action="https://genome-cancer.ucsc.edu/proj/site/hgHeatmap-cavm/" check_values="false" method="get"> - <display>go to UCSC Xena Browser $GALAXY_URL</display> - <param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> - <param name="tool_id" type="hidden" value="ucsc_xenabrowser" /> - </inputs> - <request_param_translation> - <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" /> - <request_param galaxy_name="URL" remote_name="URL" missing="" /> - </request_param_translation> - <uihints minwidth="800"/> - <outputs> - <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" /> - <data name="clinical" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' clinical'"/> - </outputs> - <options sanitize="False" refresh="True"/> -</tool>