Mercurial > repos > matthias > suite_samtools

changeset 1:52b66acb703d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
author matthias
date Fri, 22 Feb 2019 18:10:33 -0500
parents f36a1c15ae07
children 20782f9249c0
files repository_dependencies.xml
diffstat 1 files changed, 22 insertions(+), 21 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Fri Feb 22 16:07:31 2019 -0500
+++ b/repository_dependencies.xml	Fri Feb 22 18:10:33 2019 -0500
@@ -1,24 +1,25 @@
 <?xml version="1.0" ?>
 <repositories description="A suite of Galaxy tools designed to work with the SAMtools package.">
-    <repository changeset_revision="08eec8148c55" name="samtools_cram_to_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="8595ee28daf5" name="samtools_fastx" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="96894a83999c" name="samtools_reheader" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="96a28cedc284" name="samtools_merge" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="56e8f02cf63a" name="bam_to_sam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="6c9caf40b95e" name="samtools_split" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="b6284c02c437" name="samtools_view" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="50ebde5d5c63" name="samtools_fixmate" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="951c6e9486b2" name="samtools_bam_to_cram" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="8dd2f27d7555" name="samtools_idxstats" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="3f5864229a48" name="samtools_markdup" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="0dea9cdfa5b0" name="samtools_sort" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="d7e3456c9db9" name="samtools_mpileup" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="a5ad77502456" name="samtools_slice_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f3e569965e5c" name="samtools_calmd" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="8f08fd44a749" name="samtools_flagstat" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="b8db5e41d1ef" name="samtools_bedcov" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="c1af49d0c445" name="sam_to_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="c20ec709be89" name="samtools_phase" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="a115324acff0" name="samtools_stats" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="fe46361a85db" name="samtools_depth" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="fb33ddb30c86" name="samtools_cram_to_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="182573ae4a67" name="samtools_fastx" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="7d91489f0912" name="samtools_reheader" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="5707017af2ad" name="samtools_merge" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="2f6dff128b74" name="bam_to_sam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="6d3f4b43bb5d" name="samtools_split" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="96e35133961d" name="samtools_view" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="c9d7ab2814f7" name="samtools_fixmate" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="f8343489739c" name="samtools_bam_to_cram" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="0a6d0ec4e47b" name="samtools_idxstats" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="ca121afa31b6" name="samtools_markdup" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="7a167668d380" name="samtools_sort" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="9c85d0091ec5" name="samtools_mpileup" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="4a58807636a8" name="samtools_slice_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="4dcfea79bb97" name="samtools_calmd" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="f610d4247176" name="samtools_flagstat" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="5d5acf2d5d2b" name="samtools_bedcov" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="3907fe338431" name="sam_to_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="dd493690e84b" name="samtools_phase" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="3e02e0b28493" name="samtools_stats" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="80f54f6c6774" name="samtools_depth" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="406896e00d0e" name="data_manager_sam_fasta_index_builder" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
 </repositories>
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