Mercurial > repos > matthias > suite_samtools

changeset 2:20782f9249c0 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit f10a2b16814f61326750364c497ad143cac3d137-dirty
author matthias
date Mon, 25 Feb 2019 03:59:15 -0500
parents 52b66acb703d
children
files repository_dependencies.xml
diffstat 1 files changed, 21 insertions(+), 22 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Fri Feb 22 18:10:33 2019 -0500
+++ b/repository_dependencies.xml	Mon Feb 25 03:59:15 2019 -0500
@@ -1,25 +1,24 @@
 <?xml version="1.0" ?>
 <repositories description="A suite of Galaxy tools designed to work with the SAMtools package.">
-    <repository changeset_revision="fb33ddb30c86" name="samtools_cram_to_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="182573ae4a67" name="samtools_fastx" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="7d91489f0912" name="samtools_reheader" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="5707017af2ad" name="samtools_merge" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="2f6dff128b74" name="bam_to_sam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="6d3f4b43bb5d" name="samtools_split" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="96e35133961d" name="samtools_view" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="c9d7ab2814f7" name="samtools_fixmate" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f8343489739c" name="samtools_bam_to_cram" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="0a6d0ec4e47b" name="samtools_idxstats" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="ca121afa31b6" name="samtools_markdup" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="7a167668d380" name="samtools_sort" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="9c85d0091ec5" name="samtools_mpileup" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="4a58807636a8" name="samtools_slice_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="4dcfea79bb97" name="samtools_calmd" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f610d4247176" name="samtools_flagstat" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="5d5acf2d5d2b" name="samtools_bedcov" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="3907fe338431" name="sam_to_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="dd493690e84b" name="samtools_phase" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="3e02e0b28493" name="samtools_stats" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="80f54f6c6774" name="samtools_depth" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="406896e00d0e" name="data_manager_sam_fasta_index_builder" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="0ac7d143afa3" name="samtools_cram_to_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="d57f13cf1427" name="samtools_fastx" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="6cebd4fab62b" name="samtools_reheader" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="6150f219f0c5" name="samtools_merge" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="8ea26a38a88b" name="bam_to_sam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="7f7c9b220fe8" name="samtools_split" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="28e668977924" name="samtools_view" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="9419bf9a58bd" name="samtools_fixmate" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="37786ad9df3f" name="samtools_bam_to_cram" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="11cd70afb70d" name="samtools_idxstats" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="1b941ec8a062" name="samtools_markdup" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="6910a177129c" name="samtools_sort" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="90655078eafa" name="samtools_mpileup" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="b608678f3cf9" name="samtools_slice_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="9ab7010331c1" name="samtools_calmd" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="d7a81b3c7303" name="samtools_flagstat" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="e69cdb71f90c" name="samtools_bedcov" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="237af7e08152" name="sam_to_bam" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="1e749daef8a8" name="samtools_phase" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="e9df5e7da8b1" name="samtools_stats" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="40d73baf2363" name="samtools_depth" owner="matthias" toolshed="https://testtoolshed.g2.bx.psu.edu"/>
 </repositories>
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