Mercurial > repos > matt-shirley > sra_tools

diff fastq_dump.xml @ 11:cdba74ec9eca draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
updated sra_toolkit dependency in <requirements>
author Matt Shirley <mdshw5@gmail.com>
date Mon, 17 Jun 2013 14:26:40 -0400
parents 28fda7631857
children 45031bbf6b27
line wrap: on
line diff
--- a/fastq_dump.xml	Mon Jun 17 14:22:57 2013 -0400
+++ b/fastq_dump.xml	Mon Jun 17 14:26:40 2013 -0400
@@ -23,7 +23,7 @@
     <exit_code range="127" level="fatal" description="Cannot find fastq-dump binary"/>
   </stdio>
   <requirements>
-    <requirement type="binary">fastq-dump</requirement>
+    <requirement type="package" version="2.3.2-4">sra_toolkit</requirement>
   </requirements>
   <help>
     This tool extracts fastqsanger reads from SRA archives using fastq-dump. The fastq-dump program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software.