Mercurial > repos > matt-shirley > sra_tools
comparison fastq_dump.xml @ 11:cdba74ec9eca draft
updated sra_toolkit dependency in <requirements>
| author | Matt Shirley <mdshw5@gmail.com> |
|---|---|
| date | Mon, 17 Jun 2013 14:26:40 -0400 |
| parents | 28fda7631857 |
| children | 45031bbf6b27 |
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| 10:3b814b721838 | 11:cdba74ec9eca |
|---|---|
| 21 </outputs> | 21 </outputs> |
| 22 <stdio> | 22 <stdio> |
| 23 <exit_code range="127" level="fatal" description="Cannot find fastq-dump binary"/> | 23 <exit_code range="127" level="fatal" description="Cannot find fastq-dump binary"/> |
| 24 </stdio> | 24 </stdio> |
| 25 <requirements> | 25 <requirements> |
| 26 <requirement type="binary">fastq-dump</requirement> | 26 <requirement type="package" version="2.3.2-4">sra_toolkit</requirement> |
| 27 </requirements> | 27 </requirements> |
| 28 <help> | 28 <help> |
| 29 This tool extracts fastqsanger reads from SRA archives using fastq-dump. The fastq-dump program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. | 29 This tool extracts fastqsanger reads from SRA archives using fastq-dump. The fastq-dump program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. |
| 30 </help> | 30 </help> |
| 31 </tool> | 31 </tool> |