Mercurial > repos > matt-shirley > sra_tools

annotate sra_fetch.xml @ 42:ed3866e8e3b8 draft

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auto datatype for sam dump
author Matt Shirley <mdshw5@gmail.com>
date Mon, 05 Aug 2013 10:11:15 -0400
parents 4da2d7f0128e
children
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4da2d7f0128e Exposed more options for fastq_dump and sam_dump
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1 <tool id="sra_fetch" name="Fetch SRA archive" version="1.0.3">
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2 <description> by accession from NCBI SRA.</description>
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3 <command interpreter="python">sra_fetch.py --accession '$accession' --out '$output'</command>
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4 <inputs>
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5 <param name="accession" size="13" type="text" value="SRR000001" label="sra run accession"/>
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6 </inputs>
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7 <outputs>
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8 <data format="sra" name="output" label="${accession.value}"/>
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9 </outputs>
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10 <help>
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11 This tool fetches sra archives by accession from NCBI over FTP.
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12 </help>
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13 </tool>