Mercurial > repos > matt-shirley > sra_tools

diff sra_fetch.xml @ 37:4da2d7f0128e draft

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Exposed more options for fastq_dump and sam_dump
author Matt Shirley <mdshw5@gmail.com>
date Thu, 01 Aug 2013 13:57:27 -0400
parents 423f3eb06428
children
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--- a/sra_fetch.xml	Sun Jun 30 19:50:44 2013 -0400
+++ b/sra_fetch.xml	Thu Aug 01 13:57:27 2013 -0400
@@ -1,13 +1,13 @@
-<tool id="sra_fetch" name="Fetch sra run" version="1.0.3">
-  <description> by accession from NCBI sra.</description>
+<tool id="sra_fetch" name="Fetch SRA archive" version="1.0.3">
+  <description> by accession from NCBI SRA.</description>
   <command interpreter="python">sra_fetch.py --accession '$accession' --out '$output'</command>
   <inputs>
     <param name="accession" size="13" type="text" value="SRR000001" label="sra run accession"/>
   </inputs>
   <outputs>
-    <data format="sra" name="output" label="Fetch sra ${accession.value}"/>
+    <data format="sra" name="output" label="${accession.value}"/>
   </outputs>
   <help>
-    This tool fetches sra archives by accession from NCBI over ftp.
+    This tool fetches sra archives by accession from NCBI over FTP.
   </help>
 </tool>