Mercurial > repos > matt-shirley > sra_tools
diff sra_fetch.xml @ 22:423f3eb06428 draft
more fixes for sra datatype, added sra_pileup
| author | Matt Shirley <mdshw5@gmail.com> |
|---|---|
| date | Wed, 19 Jun 2013 14:11:37 -0400 |
| parents | d850324e82cf |
| children | 4da2d7f0128e |
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--- a/sra_fetch.xml Wed Jun 19 13:31:58 2013 -0400 +++ b/sra_fetch.xml Wed Jun 19 14:11:37 2013 -0400 @@ -1,13 +1,13 @@ -<tool id="sra_fetch" name="Fetch SRA" version="1.0.3"> - <description> by accession from NCBI SRA.</description> +<tool id="sra_fetch" name="Fetch sra run" version="1.0.3"> + <description> by accession from NCBI sra.</description> <command interpreter="python">sra_fetch.py --accession '$accession' --out '$output'</command> <inputs> - <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/> + <param name="accession" size="13" type="text" value="SRR000001" label="sra run accession"/> </inputs> <outputs> - <data format="sra" name="output" label="Fetch ${accession.value}"/> + <data format="sra" name="output" label="Fetch sra ${accession.value}"/> </outputs> <help> - This tool fetches SRA archives from NCBI over FTP using the python ftplib. + This tool fetches sra archives by accession from NCBI over ftp. </help> </tool>