Mercurial > repos > lparsons > htseq_count
changeset 13:256d3114ce31
Fix input format string and change dependency owners to devteam
| author | lparsons |
|---|---|
| date | Fri, 11 Apr 2014 13:58:07 -0400 |
| parents | c86659f03e98 |
| children | c1db55359a86 |
| files | htseq-count.xml tool_dependencies.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/htseq-count.xml Fri Apr 11 13:13:37 2014 -0400 +++ b/htseq-count.xml Fri Apr 11 13:58:07 2014 -0400 @@ -35,7 +35,7 @@ && samtools view -Su -t ${reference_fasta_filename}.fai $__new_file_path__/${samoutfile.id}_tmp | samtools sort -o - sorted > $samoutfile #end if</command> <inputs> - <param format="sam, bam" name="samfile" type="data" label="Aligned SAM/BAM File"/> + <param format="sam,bam" name="samfile" type="data" label="Aligned SAM/BAM File"/> <param format="gff" name="gfffile" type="data" label="GFF File"/> <param name="mode" type="select" label="Mode"> <help>Mode to handle reads overlapping more than one feature.</help>
--- a/tool_dependencies.xml Fri Apr 11 13:13:37 2014 -0400 +++ b/tool_dependencies.xml Fri Apr 11 13:58:07 2014 -0400 @@ -2,11 +2,11 @@ <tool_dependency> <package name="numpy" version="1.7.1"> - <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="55a7a5e9d63f" name="package_numpy_1_7" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="samtools" version="0.1.19"> - <repository changeset_revision="36aa94676939" name="package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="233326db3402" name="package_samtools_0_1_19" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="htseq" version="0.6.1"> @@ -15,7 +15,7 @@ <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action> <!-- populate the environment variables from the dependend repos --> <action type="set_environment_for_install"> - <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="55a7a5e9d63f" name="package_numpy_1_7" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="numpy" version="1.7.1" /> </repository> </action>