# HG changeset patch
# User lparsons
# Date 1397239087 14400
# Node ID 256d3114ce3103970631ae62631614deedacea81
# Parent  c86659f03e98922c6727c637ef471d67cc9a406b
Fix input format string and change dependency owners to devteam

diff -r c86659f03e98 -r 256d3114ce31 htseq-count.xml
--- a/htseq-count.xml	Fri Apr 11 13:13:37 2014 -0400
+++ b/htseq-count.xml	Fri Apr 11 13:58:07 2014 -0400
@@ -35,7 +35,7 @@
         && samtools view -Su -t ${reference_fasta_filename}.fai $__new_file_path__/${samoutfile.id}_tmp | samtools sort -o - sorted > $samoutfile
     #end if</command>
     <inputs>
-        <param format="sam, bam" name="samfile" type="data" label="Aligned SAM/BAM File"/>
+        <param format="sam,bam" name="samfile" type="data" label="Aligned SAM/BAM File"/>
         <param format="gff" name="gfffile" type="data" label="GFF File"/>
         <param name="mode" type="select" label="Mode">
             <help>Mode to handle reads overlapping more than one feature.</help>
diff -r c86659f03e98 -r 256d3114ce31 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Apr 11 13:13:37 2014 -0400
+++ b/tool_dependencies.xml	Fri Apr 11 13:58:07 2014 -0400
@@ -2,11 +2,11 @@
 <tool_dependency>
 
     <package name="numpy" version="1.7.1">
-        <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="55a7a5e9d63f" name="package_numpy_1_7" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
 
     <package name="samtools" version="0.1.19">
-        <repository changeset_revision="36aa94676939" name="package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="233326db3402" name="package_samtools_0_1_19" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
 
     <package name="htseq" version="0.6.1">
@@ -15,7 +15,7 @@
                 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action>
                 <!-- populate the environment variables from the dependend repos -->
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="55a7a5e9d63f" name="package_numpy_1_7" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="numpy" version="1.7.1" />
                    </repository>
                 </action>