Mercurial > repos > lparsons > fastx_barcode_splitter_enhanced
changeset 6:51e098891465 draft
planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/fastx_barcode_splitter_enhanced commit e6a486662201362134119c0ddc7151b8dd181ebd
| author | lparsons |
|---|---|
| date | Tue, 27 Oct 2015 11:46:21 -0400 |
| parents | 80e84db1c392 |
| children | 06ebd94d80ae |
| files | fastx_barcode_splitter_galaxy_wrapper.sh test-data/fastx_barcode_splitter1.out |
| diffstat | 2 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/fastx_barcode_splitter_galaxy_wrapper.sh Thu Oct 22 15:40:57 2015 -0400 +++ b/fastx_barcode_splitter_galaxy_wrapper.sh Tue Oct 27 11:46:21 2015 -0400 @@ -82,7 +82,7 @@ # with the local path replaces with a valid URL #HTMLSUMMARY=${PREFIX}stats_visible_html echo "<html><body><table border=1>" -echo "$RESULTS" | sed "s|$BASEPATH\\(.*\\)|<a href=\"\\1\">\\1<\\a>|" | \ -perl -n -i -e '$_ =~ s|\t|</td><td>|g; print "<tr><td>\n$_</td></tr>\n"' +echo "$RESULTS" | sed "s|$BASEPATH\\(.*\\)|<a href=\"\\1\">\\1</a>|" | \ +perl -n -e '$_ =~ s|\t|</td><td>|g; print "<tr><td>\n$_</td></tr>\n"' echo "<p>" echo "</table></body></html>"
--- a/test-data/fastx_barcode_splitter1.out Thu Oct 22 15:40:57 2015 -0400 +++ b/test-data/fastx_barcode_splitter1.out Tue Oct 27 11:46:21 2015 -0400 @@ -3,19 +3,19 @@ Barcode</td><td>Count</td><td>Location </td></tr> <tr><td> -BC1</td><td>11</td><td><a href="primary_3_BC1_visible.fastqsolexa">primary_3_BC1_visible.fastqsolexa<a> +BC1</td><td>11</td><td><a href="primary_3_BC1_visible.fastqsolexa">primary_3_BC1_visible.fastqsolexa</a> </td></tr> <tr><td> -BC2</td><td>12</td><td><a href="primary_3_BC2_visible.fastqsolexa">primary_3_BC2_visible.fastqsolexa<a> +BC2</td><td>12</td><td><a href="primary_3_BC2_visible.fastqsolexa">primary_3_BC2_visible.fastqsolexa</a> </td></tr> <tr><td> -BC3</td><td>9</td><td><a href="primary_3_BC3_visible.fastqsolexa">primary_3_BC3_visible.fastqsolexa<a> +BC3</td><td>9</td><td><a href="primary_3_BC3_visible.fastqsolexa">primary_3_BC3_visible.fastqsolexa</a> </td></tr> <tr><td> -BC4</td><td>1</td><td><a href="primary_3_BC4_visible.fastqsolexa">primary_3_BC4_visible.fastqsolexa<a> +BC4</td><td>1</td><td><a href="primary_3_BC4_visible.fastqsolexa">primary_3_BC4_visible.fastqsolexa</a> </td></tr> <tr><td> -unmatched</td><td>9</td><td><a href="primary_3_unmatched_visible.fastqsolexa">primary_3_unmatched_visible.fastqsolexa<a> +unmatched</td><td>9</td><td><a href="primary_3_unmatched_visible.fastqsolexa">primary_3_unmatched_visible.fastqsolexa</a> </td></tr> <tr><td> total</td><td>42