# HG changeset patch # User lparsons # Date 1445960781 14400 # Node ID 51e0988914659a47a743cd3a369427cef4198453 # Parent 80e84db1c3927e12203b48a2a71f228314139f0f planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/fastx_barcode_splitter_enhanced commit e6a486662201362134119c0ddc7151b8dd181ebd diff -r 80e84db1c392 -r 51e098891465 fastx_barcode_splitter_galaxy_wrapper.sh --- a/fastx_barcode_splitter_galaxy_wrapper.sh Thu Oct 22 15:40:57 2015 -0400 +++ b/fastx_barcode_splitter_galaxy_wrapper.sh Tue Oct 27 11:46:21 2015 -0400 @@ -82,7 +82,7 @@ # with the local path replaces with a valid URL #HTMLSUMMARY=${PREFIX}stats_visible_html echo "" -echo "$RESULTS" | sed "s|$BASEPATH\\(.*\\)|\\1<\\a>|" | \ -perl -n -i -e '$_ =~ s|\t|\n"' +echo "$RESULTS" | sed "s|$BASEPATH\\(.*\\)|\\1|" | \ +perl -n -e '$_ =~ s|\t|\n"' echo "

" echo "

|g; print "
\n$_
|g; print "
\n$_
" diff -r 80e84db1c392 -r 51e098891465 test-data/fastx_barcode_splitter1.out --- a/test-data/fastx_barcode_splitter1.out Thu Oct 22 15:40:57 2015 -0400 +++ b/test-data/fastx_barcode_splitter1.out Tue Oct 27 11:46:21 2015 -0400 @@ -3,19 +3,19 @@ BarcodeCountLocation -BC111primary_3_BC1_visible.fastqsolexa +BC111primary_3_BC1_visible.fastqsolexa -BC212primary_3_BC2_visible.fastqsolexa +BC212primary_3_BC2_visible.fastqsolexa -BC39primary_3_BC3_visible.fastqsolexa +BC39primary_3_BC3_visible.fastqsolexa -BC41primary_3_BC4_visible.fastqsolexa +BC41primary_3_BC4_visible.fastqsolexa -unmatched9primary_3_unmatched_visible.fastqsolexa +unmatched9primary_3_unmatched_visible.fastqsolexa total42