Mercurial > repos > lionelguy > spades

changeset 12:8877df82f1d7

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extension filtering was moved from spades.py to share/spades/spades_pipeline/support.py so changed sed cmd
author Takadonet <philipmabon@gmail.com>
date Tue, 06 Aug 2013 12:21:27 -0500
parents e68a1fce8071
children 1ae36afad28d
files tools/spades_2_5/tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tools/spades_2_5/tool_dependencies.xml	Tue Aug 06 09:18:20 2013 -0500
+++ b/tools/spades_2_5/tool_dependencies.xml	Tue Aug 06 12:21:27 2013 -0500
@@ -16,7 +16,7 @@
 		  <destination_directory>$INSTALL_DIR/share</destination_directory>
 		</action>
 		<!-- This is required to have spades accept .dat files -->
-		<action type="shell_command">sed -i -e "s/\('\.fa', '\.fasta', '\.fq', '\.fastq', '\.gz'\)/\\1, '.dat'/" $INSTALL_DIR/bin/spades.py</action>
+		<action type="shell_command">sed -i -e "s/\('\.fa', '\.fasta', '\.fq', '\.fastq', '\.gz'\)/\\1, '.dat'/" $INSTALL_DIR/share/spades/spades_pipeline/support.py</action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>