# HG changeset patch
# User Takadonet <philipmabon@gmail.com>
# Date 1375809687 18000
# Node ID 8877df82f1d7b23ac20817cb20ad52b9f0f40c29
# Parent  e68a1fce8071ef5a713951c89d9855f442d47608
extension filtering was moved from spades.py to share/spades/spades_pipeline/support.py so changed sed cmd

diff -r e68a1fce8071 -r 8877df82f1d7 tools/spades_2_5/tool_dependencies.xml
--- a/tools/spades_2_5/tool_dependencies.xml	Tue Aug 06 09:18:20 2013 -0500
+++ b/tools/spades_2_5/tool_dependencies.xml	Tue Aug 06 12:21:27 2013 -0500
@@ -16,7 +16,7 @@
 		  <destination_directory>$INSTALL_DIR/share</destination_directory>
 		</action>
 		<!-- This is required to have spades accept .dat files -->
-		<action type="shell_command">sed -i -e "s/\('\.fa', '\.fasta', '\.fq', '\.fastq', '\.gz'\)/\\1, '.dat'/" $INSTALL_DIR/bin/spades.py</action>
+		<action type="shell_command">sed -i -e "s/\('\.fa', '\.fasta', '\.fq', '\.fastq', '\.gz'\)/\\1, '.dat'/" $INSTALL_DIR/share/spades/spades_pipeline/support.py</action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>