Mercurial > repos > leomrtns > checkm_lineage_wf

diff macros.xml @ 0:cb30bd36bfd0 draft default tip

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planemo upload
author leomrtns
date Wed, 02 Oct 2019 10:51:58 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Wed Oct 02 10:51:58 2019 -0400
@@ -0,0 +1,24 @@
+<macros>
+    <token name="@TOOL_VERSION@">1.0.11</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">checkm-genome</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code level="fatal" range="1:" description="Error"/>
+	    <regex match="Expected all files to contain sequences in" source="both" level="fatal" description="nt/aa sequences provided but aa/nt sequences expected"/>
+        </stdio>
+
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[checkm -h | grep "CheckM v" | sed 's/CheckM v//; s/[:. ]\{2,\}//g']]></version_command>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1101/gr.186072.114</citation>
+        </citations>
+    </xml>
+</macros>