view macros.xml @ 0:cb30bd36bfd0 draft default tip

planemo upload

<macros>
    <token name="@TOOL_VERSION@">1.0.11</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">checkm-genome</requirement>
            <yield/>
        </requirements>
    </xml>
    <xml name="stdio">
        <stdio>
            <exit_code level="fatal" range="1:" description="Error"/>
	    <regex match="Expected all files to contain sequences in" source="both" level="fatal" description="nt/aa sequences provided but aa/nt sequences expected"/>
        </stdio>

    </xml>
    <xml name="version_command">
        <version_command><![CDATA[checkm -h | grep "CheckM v" | sed 's/CheckM v//; s/[:. ]\{2,\}//g']]></version_command>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1101/gr.186072.114</citation>
        </citations>
    </xml>
</macros>