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1 <macros>
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2 <token name="@TOOL_VERSION@">1.0.11</token>
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3 <xml name="requirements">
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4 <requirements>
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5 <requirement type="package" version="@TOOL_VERSION@">checkm-genome</requirement>
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6 <yield/>
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7 </requirements>
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8 </xml>
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9 <xml name="stdio">
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10 <stdio>
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11 <exit_code level="fatal" range="1:" description="Error"/>
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12 <regex match="Expected all files to contain sequences in" source="both" level="fatal" description="nt/aa sequences provided but aa/nt sequences expected"/>
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13 </stdio>
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14
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15 </xml>
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16 <xml name="version_command">
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17 <version_command><![CDATA[checkm -h | grep "CheckM v" | sed 's/CheckM v//; s/[:. ]\{2,\}//g']]></version_command>
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18 </xml>
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19 <xml name="citations">
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20 <citations>
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21 <citation type="doi">10.1101/gr.186072.114</citation>
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22 </citations>
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23 </xml>
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24 </macros>
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