xcms_xcmsset: README.rst annotate

annotate README.rst @ 13:68547432079b draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4

author	lecorguille
date	Wed, 06 Jul 2016 17:42:16 -0400
parents	32cbf37cfee2
children	1a9bbd4670e8

rev	line source
4 4509e9dd03e4 planemo upload lecorguille parents: diff changeset	1
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	2 Changelog/News
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	3 --------------
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	4
13 68547432079b planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4 lecorguille parents: 9 diff changeset	5 Version 2.0.9 - 06/07/2016
68547432079b planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4 lecorguille parents: 9 diff changeset	6
68547432079b planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4 lecorguille parents: 9 diff changeset	7 - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0
68547432079b planemo upload for repository https://github.com/workflow4metabolomics/xcms commit ec6f0c17bb277ea34f898d96d12d3357220f73d4 lecorguille parents: 9 diff changeset	8
6 60f6c208ca16 planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e lecorguille parents: 5 diff changeset	9 Version 2.0.8 - 06/04/2016
60f6c208ca16 planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e lecorguille parents: 5 diff changeset	10
60f6c208ca16 planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e lecorguille parents: 5 diff changeset	11 - TEST: refactoring to pass planemo test using conda dependencies
60f6c208ca16 planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e lecorguille parents: 5 diff changeset	12
4 4509e9dd03e4 planemo upload lecorguille parents: diff changeset	13
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	14 Version 2.0.7 - 10/02/2016
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	15
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	16 - BUGFIX: better management of errors. Datasets remained green although the process failed
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	17
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	18 - BUGFIX/IMPROVEMENT: New checking steps around the imported data in order to raise explicte error message before or after launch XCMS: checking of bad characters in the filenames, checking of the XML integrity and checking of duplicates which can appear in the sample names during the XCMS process because of bad characters
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	19
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	20 - BUGFIX/IMPROVEMENT: New step to check and delete bad characters in the XML: accented characters in the storage path of the mass spectrometer
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	21
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	22 - UPDATE: refactoring of internal management of inputs/outputs
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	23
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	24 - UPDATE: refactoring to feed the new report tool
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	25
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	26
5 b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	27 Version 2.0.2 - 18/01/2016
4 4509e9dd03e4 planemo upload lecorguille parents: diff changeset	28
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	29 - BUGFIX: Some zip files were tag as "corrupt" by R. We have changed the extraction mode to deal with thoses cases.
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	30
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	31
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	32 Version 2.0.2 - 09/10/2015
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	33
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	34 - BUGFIX: Some users reported a bug in xcms.xcmsSet. The preprocessing stops itself and doesn't import the whole dataset contained in the zip file without warning. But meanwhile, please check your samplemetadata dataset and the number of rows.
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	35
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	36
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	37 Version 2.0.2 - 02/06/2015
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	38
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	39 - NEW: The W4M workflows will now take as input a zip file to ease the transfer and to improve dataset exchange between tools and users. (See How_to_upload). The previous "Library directory name" is still available but we invite user to switch on the new zip system as soon as possible.
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	40
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	41 - IMPROVEMENT: new datatype/dataset formats (rdata.xcms.raw, rdata.xcms.group, rdata.xcms.retcor ...) will facilitate the sequence of tools and so avoid incompatibility errors.
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	42
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	43 - IMPROVEMENT: parameter labels have changed to facilitate their reading.
5 b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	44
b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	45
b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	46 Test Status
b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	47 -----------
b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	48
6 60f6c208ca16 planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e lecorguille parents: 5 diff changeset	49 Planemo test using conda: passed
9 32cbf37cfee2 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 83b80dcd96b379518c2e4ace992affc889d32ca6 lecorguille parents: 8 diff changeset	50
8 9c3e676f7c6c planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 1bf8810447bdd1268f67bfb64ead95ce82d8d85c lecorguille parents: 6 diff changeset	51 Planemo test using source env.sh: passed
5 b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	52
9 32cbf37cfee2 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 83b80dcd96b379518c2e4ace992affc889d32ca6 lecorguille parents: 8 diff changeset	53 Planemo shed_test : passed

Mercurial > repos > lecorguille > xcms_xcmsset

annotate README.rst @ 13:68547432079b draft