xcms_xcmsset: README.rst annotate

annotate README.rst @ 9:32cbf37cfee2 draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 83b80dcd96b379518c2e4ace992affc889d32ca6

author	lecorguille
date	Fri, 08 Apr 2016 10:32:19 -0400
parents	9c3e676f7c6c
children	68547432079b

rev	line source
4 4509e9dd03e4 planemo upload lecorguille parents: diff changeset	1
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	2 Changelog/News
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	3 --------------
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	4
6 60f6c208ca16 planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e lecorguille parents: 5 diff changeset	5 Version 2.0.8 - 06/04/2016
60f6c208ca16 planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e lecorguille parents: 5 diff changeset	6
60f6c208ca16 planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e lecorguille parents: 5 diff changeset	7 - TEST: refactoring to pass planemo test using conda dependencies
60f6c208ca16 planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e lecorguille parents: 5 diff changeset	8
4 4509e9dd03e4 planemo upload lecorguille parents: diff changeset	9
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	10 Version 2.0.7 - 10/02/2016
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	11
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	12 - BUGFIX: better management of errors. Datasets remained green although the process failed
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	13
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	14 - BUGFIX/IMPROVEMENT: New checking steps around the imported data in order to raise explicte error message before or after launch XCMS: checking of bad characters in the filenames, checking of the XML integrity and checking of duplicates which can appear in the sample names during the XCMS process because of bad characters
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	15
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	16 - BUGFIX/IMPROVEMENT: New step to check and delete bad characters in the XML: accented characters in the storage path of the mass spectrometer
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	17
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	18 - UPDATE: refactoring of internal management of inputs/outputs
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	19
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	20 - UPDATE: refactoring to feed the new report tool
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	21
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	22
5 b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	23 Version 2.0.2 - 18/01/2016
4 4509e9dd03e4 planemo upload lecorguille parents: diff changeset	24
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	25 - BUGFIX: Some zip files were tag as "corrupt" by R. We have changed the extraction mode to deal with thoses cases.
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	26
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	27
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	28 Version 2.0.2 - 09/10/2015
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	29
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	30 - BUGFIX: Some users reported a bug in xcms.xcmsSet. The preprocessing stops itself and doesn't import the whole dataset contained in the zip file without warning. But meanwhile, please check your samplemetadata dataset and the number of rows.
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	31
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	32
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	33 Version 2.0.2 - 02/06/2015
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	34
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	35 - NEW: The W4M workflows will now take as input a zip file to ease the transfer and to improve dataset exchange between tools and users. (See How_to_upload). The previous "Library directory name" is still available but we invite user to switch on the new zip system as soon as possible.
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	36
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	37 - IMPROVEMENT: new datatype/dataset formats (rdata.xcms.raw, rdata.xcms.group, rdata.xcms.retcor ...) will facilitate the sequence of tools and so avoid incompatibility errors.
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	38
4509e9dd03e4 planemo upload lecorguille parents: diff changeset	39 - IMPROVEMENT: parameter labels have changed to facilitate their reading.
5 b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	40
b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	41
b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	42 Test Status
b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	43 -----------
b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	44
6 60f6c208ca16 planemo upload commit a3229faad6949bbca965d1d7e138cb3c0550780e lecorguille parents: 5 diff changeset	45 Planemo test using conda: passed
9 32cbf37cfee2 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 83b80dcd96b379518c2e4ace992affc889d32ca6 lecorguille parents: 8 diff changeset	46
8 9c3e676f7c6c planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 1bf8810447bdd1268f67bfb64ead95ce82d8d85c lecorguille parents: 6 diff changeset	47 Planemo test using source env.sh: passed
5 b9a87af62223 planemo upload commit 5a5b747865d7fb76f711bce2d9ce2a0f82a2a374-dirty lecorguille parents: 4 diff changeset	48
9 32cbf37cfee2 planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 83b80dcd96b379518c2e4ace992affc889d32ca6 lecorguille parents: 8 diff changeset	49 Planemo shed_test : passed

Mercurial > repos > lecorguille > xcms_xcmsset

annotate README.rst @ 9:32cbf37cfee2 draft