Mercurial > repos > lecorguille > msnbase_readmsdata
changeset 11:144392dd4a31 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 60ad498b7bd01542a69d6603160d36494c97077a
| author | lecorguille |
|---|---|
| date | Tue, 30 Apr 2019 05:12:42 -0400 |
| parents | 84533814b1d5 |
| children | d1ec753f586f |
| files | README.rst msnbase_readmsdata.r msnbase_readmsdata.xml |
| diffstat | 3 files changed, 12 insertions(+), 4 deletions(-) [+] |
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--- a/README.rst Mon Apr 29 06:07:14 2019 -0400 +++ b/README.rst Tue Apr 30 05:12:42 2019 -0400 @@ -2,6 +2,10 @@ Changelog/News -------------- +**Version 2.8.2.1 - 30/04/2019** + +- BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms. + **Version 2.8.2.0 - 08/04/2019** - UPGRADE: upgrade the MSnbase version from 2.4.0 to 2.8.2 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase.
--- a/msnbase_readmsdata.r Mon Apr 29 06:07:14 2019 -0400 +++ b/msnbase_readmsdata.r Tue Apr 30 05:12:42 2019 -0400 @@ -76,9 +76,9 @@ # Create a sampleMetada file sampleNamesList <- getSampleMetadata(xdata=raw_data, sampleMetadataOutput="sampleMetadata.tsv") -cat("\t\t\tCompute and Store TIC and BPI\n") -chromTIC <- chromatogram(raw_data, aggregationFun = "sum") -chromBPI <- chromatogram(raw_data, aggregationFun = "max") +#cat("\t\t\tCompute and Store TIC and BPI\n") +#chromTIC <- chromatogram(raw_data, aggregationFun = "sum") +#chromBPI <- chromatogram(raw_data, aggregationFun = "max") cat("\n\n")
--- a/msnbase_readmsdata.xml Mon Apr 29 06:07:14 2019 -0400 +++ b/msnbase_readmsdata.xml Tue Apr 30 05:12:42 2019 -0400 @@ -1,4 +1,4 @@ -<tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@.0"> +<tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@.1"> <description>Imports mass-spectrometry data files</description> <macros> @@ -232,6 +232,10 @@ .. _News: https://bioconductor.org/packages/release/bioc/news/MSnbase/NEWS +**Version 2.8.2.1 - 30/04/2019** + +- BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms. + **Version 2.8.2.0 - 08/04/2019** - UPGRADE: upgrade the MSnbase version from 2.4.0 to 2.8.2 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase.