# HG changeset patch
# User lecorguille
# Date 1556615562 14400
# Node ID 144392dd4a31a87afe9d8c78b915b6c6f740d23a
# Parent  84533814b1d59673fb8e058a00146713bb7a72c0
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 60ad498b7bd01542a69d6603160d36494c97077a

diff -r 84533814b1d5 -r 144392dd4a31 README.rst
--- a/README.rst	Mon Apr 29 06:07:14 2019 -0400
+++ b/README.rst	Tue Apr 30 05:12:42 2019 -0400
@@ -2,6 +2,10 @@
 Changelog/News
 --------------
 
+**Version 2.8.2.1 - 30/04/2019**
+
+- BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms.
+
 **Version 2.8.2.0 - 08/04/2019**
 
 - UPGRADE: upgrade the MSnbase version from 2.4.0 to 2.8.2 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase.
diff -r 84533814b1d5 -r 144392dd4a31 msnbase_readmsdata.r
--- a/msnbase_readmsdata.r	Mon Apr 29 06:07:14 2019 -0400
+++ b/msnbase_readmsdata.r	Tue Apr 30 05:12:42 2019 -0400
@@ -76,9 +76,9 @@
 # Create a sampleMetada file
 sampleNamesList <- getSampleMetadata(xdata=raw_data, sampleMetadataOutput="sampleMetadata.tsv")
 
-cat("\t\t\tCompute and Store TIC and BPI\n")
-chromTIC <- chromatogram(raw_data, aggregationFun = "sum")
-chromBPI <- chromatogram(raw_data, aggregationFun = "max")
+#cat("\t\t\tCompute and Store TIC and BPI\n")
+#chromTIC <- chromatogram(raw_data, aggregationFun = "sum")
+#chromBPI <- chromatogram(raw_data, aggregationFun = "max")
 
 cat("\n\n")
 
diff -r 84533814b1d5 -r 144392dd4a31 msnbase_readmsdata.xml
--- a/msnbase_readmsdata.xml	Mon Apr 29 06:07:14 2019 -0400
+++ b/msnbase_readmsdata.xml	Tue Apr 30 05:12:42 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@.0">
+<tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@.1">
     <description>Imports mass-spectrometry data files</description>
 
     <macros>
@@ -232,6 +232,10 @@
 
 .. _News: https://bioconductor.org/packages/release/bioc/news/MSnbase/NEWS
 
+**Version 2.8.2.1 - 30/04/2019**
+
+- BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms.
+
 **Version 2.8.2.0 - 08/04/2019**
 
 - UPGRADE: upgrade the MSnbase version from 2.4.0 to 2.8.2 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase.