Mercurial > repos > lecorguille > ipo
changeset 8:80de755766a8 draft
planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
| author | lecorguille |
|---|---|
| date | Thu, 03 Aug 2017 05:56:58 -0400 |
| parents | dd0a593dded1 |
| children | 364756ea5f42 |
| files | ipo4retgroup.r ipo4xcmsSet.r macros.xml |
| diffstat | 3 files changed, 1 insertions(+), 8 deletions(-) [+] |
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--- a/ipo4retgroup.r Wed Apr 12 08:53:04 2017 -0400 +++ b/ipo4retgroup.r Thu Aug 03 05:56:58 2017 -0400 @@ -108,7 +108,6 @@ # Because IPO only want raw data in its working directory dir.create("ipoworkingdir") setwd("ipoworkingdir") - file.symlink(zipfile, ".") #unzip suppressWarnings(unzip(zipfile, unzip="unzip")) @@ -122,8 +121,6 @@ cat("files_root_directory\t",directory,"\n") - file.remove(basename(zipfile)) - }
--- a/ipo4xcmsSet.r Wed Apr 12 08:53:04 2017 -0400 +++ b/ipo4xcmsSet.r Thu Aug 03 05:56:58 2017 -0400 @@ -107,7 +107,6 @@ # Because IPO only want raw data in its working directory dir.create("ipoworkingdir") setwd("ipoworkingdir") - file.symlink(zipfile, ".") #unzip suppressWarnings(unzip(zipfile, unzip="unzip")) @@ -121,8 +120,6 @@ cat("files_root_directory\t",directory,"\n") - file.remove(zipfile) - }
--- a/macros.xml Wed Apr 12 08:53:04 2017 -0400 +++ b/macros.xml Thu Aug 03 05:56:58 2017 -0400 @@ -3,9 +3,8 @@ <xml name="requirements"> <requirements> <requirement type="package" version="0.4_1">r-snow</requirement> - <requirement type="package" version="1.7.5">r-ipo</requirement> + <requirement type="package" version="1.0.0">bioconductor-ipo</requirement> <requirement type="package" version="1.1_4">r-batch</requirement> - <!--<requirement type="package" version="1.7.5">r-ipo-meta</requirement>--> </requirements> </xml> <xml name="stdio">