# HG changeset patch
# User lecorguille
# Date 1501754218 14400
# Node ID 80de755766a83039e7c5b0a7241ca497d7042b7b
# Parent  dd0a593dded1a682d10dd78e56de3b18bcbc1776
planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0

diff -r dd0a593dded1 -r 80de755766a8 ipo4retgroup.r
--- a/ipo4retgroup.r	Wed Apr 12 08:53:04 2017 -0400
+++ b/ipo4retgroup.r	Thu Aug 03 05:56:58 2017 -0400
@@ -108,7 +108,6 @@
     # Because IPO only want raw data in its working directory
     dir.create("ipoworkingdir")
     setwd("ipoworkingdir")
-    file.symlink(zipfile, ".")
 
     #unzip
     suppressWarnings(unzip(zipfile, unzip="unzip"))
@@ -122,8 +121,6 @@
 
     cat("files_root_directory\t",directory,"\n")
 
-    file.remove(basename(zipfile))
-
 
 }
 
diff -r dd0a593dded1 -r 80de755766a8 ipo4xcmsSet.r
--- a/ipo4xcmsSet.r	Wed Apr 12 08:53:04 2017 -0400
+++ b/ipo4xcmsSet.r	Thu Aug 03 05:56:58 2017 -0400
@@ -107,7 +107,6 @@
     # Because IPO only want raw data in its working directory
     dir.create("ipoworkingdir")
     setwd("ipoworkingdir")
-    file.symlink(zipfile, ".")
 
     #unzip
     suppressWarnings(unzip(zipfile, unzip="unzip"))
@@ -121,8 +120,6 @@
 
     cat("files_root_directory\t",directory,"\n")
 
-    file.remove(zipfile)
-
 
 }
 
diff -r dd0a593dded1 -r 80de755766a8 macros.xml
--- a/macros.xml	Wed Apr 12 08:53:04 2017 -0400
+++ b/macros.xml	Thu Aug 03 05:56:58 2017 -0400
@@ -3,9 +3,8 @@
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="0.4_1">r-snow</requirement>
-            <requirement type="package" version="1.7.5">r-ipo</requirement>
+            <requirement type="package" version="1.0.0">bioconductor-ipo</requirement>
             <requirement type="package" version="1.1_4">r-batch</requirement>
-	    <!--<requirement type="package" version="1.7.5">r-ipo-meta</requirement>-->
         </requirements>
     </xml>
     <xml name="stdio">