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annotate planemo_test.sh @ 8:80de755766a8 draft

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planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
author lecorguille
date Thu, 03 Aug 2017 05:56:58 -0400
parents 03fdfbd914ab
children
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9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
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1 conda create -n r-ipo --use-local r-ipo r-batch
9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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2 . ~/miniconda2/bin/activate r-ipo
9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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3 planemo test --install_galaxy --galaxy_branch "dev" --update_test_data
9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
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9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
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9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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6 # -- Use of conda dependencies
9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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7 planemo conda_init --conda_prefix /tmp/mc
9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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8 planemo conda_install --conda_prefix /tmp/mc .
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9fa5856f6184 planemo upload commit 98cb24e57c0ce8ac3294e8c7e87aee337ac29f62
lecorguille
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9 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution
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03fdfbd914ab planemo upload commit 8dfb0b11442ccce78165b5d8f07555ccbd303cce
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03fdfbd914ab planemo upload commit 8dfb0b11442ccce78165b5d8f07555ccbd303cce
lecorguille
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11 planemo test --conda_auto_init --conda_auto_install --conda_dependency_resolution --conda_prefix /tmp/mc --galaxy_branch dev > planemo.out 2>&1