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annotate planemo_test.sh @ 3:9f1e18bc8ce3 draft

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planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
author lecorguille
date Thu, 28 Jul 2016 11:03:04 -0400
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9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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1 conda create -n r-ipo --use-local r-ipo r-batch
9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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2 . ~/miniconda2/bin/activate r-ipo
9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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3 planemo test --install_galaxy --galaxy_branch "dev" --update_test_data
9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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6 # -- Use of conda dependencies
9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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7 planemo conda_init --conda_prefix /tmp/mc
9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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8 planemo conda_install --conda_prefix /tmp/mc .
9f1e18bc8ce3 planemo upload commit ceb25d29a013b58d3476323f202276e7c876648a-dirty
lecorguille
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diff changeset
9 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --update_test_data