Mercurial > repos > kpbioteam > minfi_dmr
changeset 22:a6f5812102ef draft
planemo upload for repository https://github.com/kpbioteam/minfi_dmr commit 65d01f00526cadfcd1f52d06243fbc87ffee462f-dirty
| author | kpbioteam |
|---|---|
| date | Wed, 13 Jun 2018 09:26:32 -0400 |
| parents | a9bdbb071346 |
| children | 82ded555555d |
| files | 0.05 minfi_dmr.R |
| diffstat | 2 files changed, 16723 insertions(+), 1 deletions(-) [+] |
line wrap: on
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/0.05 Wed Jun 13 09:26:32 2018 -0400 @@ -0,0 +1,16720 @@ +seqnames start end width strand area value +chrX 68047520 68049085 1566 * 13.559071306824 0.521502742570152 +chrX 48754982 48755797 816 * 10.9187994853289 0.519942832634712 +chrX 47004051 47005131 1081 * 9.30496950054223 0.516942750030124 +chrX 110038886 110039604 719 * 9.15166255544827 0.538333091496957 +chrX 7895031 7896360 1330 * 9.0186963859978 0.530511552117518 +chrX 153775262 153776107 846 * 8.8961832017677 0.523304894221629 +chrX 48768632 48769670 1039 * 8.86784774515986 0.521638102656463 +chrX 47518016 47518849 834 * 8.83218169060358 0.519540099447269 +chrX 100603351 100604329 979 * 8.75747172801691 0.5151453957657 +chrX 152938698 152940274 1577 * 8.06615661246139 0.576154043747242 +chrX 128977299 128978347 1049 * 7.83078878535237 0.522052585690158 +chrX 133680249 133680974 726 * 7.81500163973275 0.651250136644396 +chrX 103267926 103268686 761 * 7.80954902010755 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--- a/minfi_dmr.R Tue Jun 12 12:31:26 2018 -0400 +++ b/minfi_dmr.R Wed Jun 13 09:26:32 2018 -0400 @@ -58,4 +58,6 @@ dmrGR <- with(dmrs$table,GRanges(chr,IRanges(start,end),area=area,value=value)) -write.table(dmrGR, file= output1, quote = FALSE, row.names = FALSE, sep = "\t") +dmrGRtab <- as.data.frame(dmrGR) + +write.table(dmrGRtab, file= output1, quote = FALSE, row.names = FALSE, sep = "\t")