Mercurial > repos > kpbioteam > minfi_dmr
changeset 23:82ded555555d draft
planemo upload for repository https://github.com/kpbioteam/minfi_dmr commit 65d01f00526cadfcd1f52d06243fbc87ffee462f-dirty
| author | kpbioteam |
|---|---|
| date | Wed, 13 Jun 2018 09:47:48 -0400 |
| parents | a6f5812102ef |
| children | 6a075dd8f382 |
| files | minfi_dmr.R |
| diffstat | 1 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/minfi_dmr.R Wed Jun 13 09:26:32 2018 -0400 +++ b/minfi_dmr.R Wed Jun 13 09:47:48 2018 -0400 @@ -58,6 +58,8 @@ dmrGR <- with(dmrs$table,GRanges(chr,IRanges(start,end),area=area,value=value)) -dmrGRtab <- as.data.frame(dmrGR) +dmrGR <- as.data.frame(dmrGR) -write.table(dmrGRtab, file= output1, quote = FALSE, row.names = FALSE, sep = "\t") +colnames(dmrGR) <- c("seqnames","start","end","width","strand","area","value") + +write.table(dmrGR, file= output1, quote = FALSE, row.names = FALSE, sep = "\t")