Mercurial > repos > kpbioteam > chipeakanno_annopeaks
changeset 10:b1274d30071e draft
planemo upload for repository https://github.com/kpbioteam/chipeakanno_annopeaks commit 5ee10ba73cd634a41b84f059f02edeaa04f69b8d-dirty
| author | kpbioteam |
|---|---|
| date | Thu, 21 Jun 2018 11:50:00 -0400 |
| parents | 8d05c398fecd |
| children | 8a91d82803a9 |
| files | chipeakanno_annopeaks.R chipeakanno_annopeaks.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/chipeakanno_annopeaks.R Thu Jun 21 11:38:08 2018 -0400 +++ b/chipeakanno_annopeaks.R Thu Jun 21 11:50:00 2018 -0400 @@ -12,7 +12,7 @@ input3 = as.numeric(args[3]) input4 = as.numeric(args[4]) input5 = as.numeric(args[5]) -output1 = args[5] +output1 = args[6] DMRInfo <- read.table(input1) peaks <- GRanges(seqnames = DMRInfo[, 1],
--- a/chipeakanno_annopeaks.xml Thu Jun 21 11:38:08 2018 -0400 +++ b/chipeakanno_annopeaks.xml Thu Jun 21 11:50:00 2018 -0400 @@ -6,7 +6,7 @@ <requirement type="package" version="1.38.3">bioconductor-rtracklayer</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ - Rscript ${__tool_directory__}/chipeakanno_annopeaks.R "$input1" "$input2" "$input3" "$input4" "$output1" + Rscript ${__tool_directory__}/chipeakanno_annopeaks.R "$input1" "$input2" "$input3" "$input4" "$input5" "$output1" ]]></command> <inputs> <param type="data" name="input1" format="bedgraph"/>