# HG changeset patch
# User kpbioteam
# Date 1529596200 14400
# Node ID b1274d30071e5be9c8451b0f198a58188b9068fb
# Parent  8d05c398fecd2923ce614c184f19680a4b410461
planemo upload for repository https://github.com/kpbioteam/chipeakanno_annopeaks commit 5ee10ba73cd634a41b84f059f02edeaa04f69b8d-dirty

diff -r 8d05c398fecd -r b1274d30071e chipeakanno_annopeaks.R
--- a/chipeakanno_annopeaks.R	Thu Jun 21 11:38:08 2018 -0400
+++ b/chipeakanno_annopeaks.R	Thu Jun 21 11:50:00 2018 -0400
@@ -12,7 +12,7 @@
 input3  = as.numeric(args[3])
 input4 = as.numeric(args[4])
 input5 = as.numeric(args[5])
-output1  = args[5]
+output1  = args[6]
 
 DMRInfo <-  read.table(input1)
 peaks <- GRanges(seqnames = DMRInfo[, 1],
diff -r 8d05c398fecd -r b1274d30071e chipeakanno_annopeaks.xml
--- a/chipeakanno_annopeaks.xml	Thu Jun 21 11:38:08 2018 -0400
+++ b/chipeakanno_annopeaks.xml	Thu Jun 21 11:50:00 2018 -0400
@@ -6,7 +6,7 @@
         <requirement type="package" version="1.38.3">bioconductor-rtracklayer</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        Rscript  ${__tool_directory__}/chipeakanno_annopeaks.R "$input1" "$input2" "$input3" "$input4" "$output1"
+        Rscript  ${__tool_directory__}/chipeakanno_annopeaks.R "$input1" "$input2" "$input3" "$input4" "$input5" "$output1"
     ]]></command>
     <inputs>
         <param type="data" name="input1" format="bedgraph"/>