Mercurial > repos > kpbioteam > chipeakanno_annopeaks
changeset 3:9ec5e9e2e7b2 draft
planemo upload for repository https://github.com/kpbioteam/chipeakanno_annopeaks commit c53721636b1df8f6d7791eb67c86df36e9d97784
| author | kpbioteam |
|---|---|
| date | Tue, 12 Jun 2018 08:36:25 -0400 |
| parents | ad60ed89de63 |
| children | b5bc7e70b949 |
| files | chipeakanno_annopeaks.R chipeakanno_annopeaks.Rproj |
| diffstat | 2 files changed, 19 insertions(+), 1 deletions(-) [+] |
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--- a/chipeakanno_annopeaks.R Wed May 02 11:04:20 2018 -0400 +++ b/chipeakanno_annopeaks.R Tue Jun 12 08:36:25 2018 -0400 @@ -1,3 +1,8 @@ +source("https://bioconductor.org/biocLite.R") +biocLite("ChIPpeakAnno") + +biocLite("rtracklayer") + require("ChIPpeakAnno", quietly = TRUE) require("EnsDb.Hsapiens.v75", quietly = TRUE) require("rtracklayer", quietly = TRUE) @@ -23,4 +28,4 @@ anno <- annoPeaks(peaks, annoData=annoData, bindingType =c(input2), bindingRegion=c(input3, input4)) - write.table(anno, file= output1, row.names = FALSE) + write.table(anno, file= output1, quote = FALSE, row.names = FALSE, sep = "/t")
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/chipeakanno_annopeaks.Rproj Tue Jun 12 08:36:25 2018 -0400 @@ -0,0 +1,13 @@ +Version: 1.0 + +RestoreWorkspace: Default +SaveWorkspace: Default +AlwaysSaveHistory: Default + +EnableCodeIndexing: Yes +UseSpacesForTab: Yes +NumSpacesForTab: 2 +Encoding: UTF-8 + +RnwWeave: Sweave +LaTeX: pdfLaTeX