# HG changeset patch
# User kpbioteam
# Date 1528806985 14400
# Node ID 9ec5e9e2e7b2b126cc0ebe42c97e85c4ae4e56b0
# Parent  ad60ed89de63a08942f020f698e11798e61cb9cf
planemo upload for repository https://github.com/kpbioteam/chipeakanno_annopeaks commit c53721636b1df8f6d7791eb67c86df36e9d97784

diff -r ad60ed89de63 -r 9ec5e9e2e7b2 chipeakanno_annopeaks.R
--- a/chipeakanno_annopeaks.R	Wed May 02 11:04:20 2018 -0400
+++ b/chipeakanno_annopeaks.R	Tue Jun 12 08:36:25 2018 -0400
@@ -1,3 +1,8 @@
+source("https://bioconductor.org/biocLite.R")
+biocLite("ChIPpeakAnno")
+ 
+biocLite("rtracklayer")
+
 require("ChIPpeakAnno", quietly = TRUE)
 require("EnsDb.Hsapiens.v75", quietly = TRUE)
 require("rtracklayer", quietly = TRUE)
@@ -23,4 +28,4 @@
 
  anno <- annoPeaks(peaks, annoData=annoData, bindingType =c(input2), bindingRegion=c(input3, input4))
  
- write.table(anno, file= output1, row.names = FALSE)
+ write.table(anno, file= output1, quote = FALSE, row.names = FALSE, sep = "/t")
diff -r ad60ed89de63 -r 9ec5e9e2e7b2 chipeakanno_annopeaks.Rproj
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/chipeakanno_annopeaks.Rproj	Tue Jun 12 08:36:25 2018 -0400
@@ -0,0 +1,13 @@
+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX