Mercurial > repos > kevyin > homer
changeset 11:31b95602305d draft
Uploaded
| author | kevyin |
|---|---|
| date | Thu, 01 Nov 2012 23:05:41 -0400 |
| parents | 7fea790cb6a7 |
| children | 1bce61936d45 |
| files | annotatePeaks.xml |
| diffstat | 1 files changed, 0 insertions(+), 41 deletions(-) [+] |
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--- a/annotatePeaks.xml Thu Nov 01 02:09:16 2012 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,41 +0,0 @@ -<tool id="homer-annotate-peaks" name="annotate-peaks" version="0.0.1"> - <requirements> - <requirement type="package">homer</requirement> - </requirements> - <description></description> - <!--<version_command></version_command>--> - <command> - annotatePeaks.pl $input_bed $genome_selector 1> $out_annotated - 2> $out_log || echo "Error running annotatePeaks." >&2 - </command> - <inputs> - <param format="bed" name="input_bed" type="data" label="Intervals in BED format" /> - <param name="genome_selector" type="select" label="Genome version"> - <option value="hg19" selected="true">hg19</option> - </param> - </inputs> - <outputs> - <!--<data format="html" name="html_outfile" label="index" />--> - <!--<data format="html" hidden="True" name="html_outfile" label="index.html" />--> - <data format="csv" name="out_annotated" label="Annotated" /> - <data format="txt" name="out_log" label="homer_annotatePeaks.log" /> - </outputs> - <tests> - <test> - <!--<param name="input_file" value="extract_genomic_dna.fa" />--> - <!--<output name="html_file" file="sample_output.html" ftype="html" />--> - </test> - </tests> - - <help> - - .. class:: infomark - - **Homer annoatePeaks** - More information on accepted formats - http://biowhat.ucsd.edu/homer/ngs/annotation.html - - - </help> -</tool> -