# HG changeset patch
# User kevyin
# Date 1351825541 14400
# Node ID 31b95602305dc088d54ee816e9f978c450a9aba2
# Parent  7fea790cb6a7a94ce468a0bed47ddc6285650bcf
Uploaded

diff -r 7fea790cb6a7 -r 31b95602305d annotatePeaks.xml
--- a/annotatePeaks.xml	Thu Nov 01 02:09:16 2012 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,41 +0,0 @@
-<tool id="homer-annotate-peaks" name="annotate-peaks" version="0.0.1">
-    <requirements>
-        <requirement type="package">homer</requirement>
-    </requirements>
-    <description></description>
-    <!--<version_command></version_command>-->
-    <command>
-        annotatePeaks.pl $input_bed $genome_selector 1&gt; $out_annotated
-        2&gt; $out_log || echo "Error running annotatePeaks." >&amp;2
-    </command>
-    <inputs>
-        <param format="bed" name="input_bed" type="data" label="Intervals in BED format" />
-        <param name="genome_selector" type="select" label="Genome version">
-            <option value="hg19" selected="true">hg19</option>
-        </param>
-    </inputs>
-    <outputs>
-        <!--<data format="html" name="html_outfile" label="index" />-->
-        <!--<data format="html" hidden="True" name="html_outfile" label="index.html" />-->
-        <data format="csv" name="out_annotated" label="Annotated" />
-        <data format="txt" name="out_log" label="homer_annotatePeaks.log" />
-    </outputs>
-    <tests>
-        <test>
-            <!--<param name="input_file" value="extract_genomic_dna.fa" />-->
-            <!--<output name="html_file" file="sample_output.html" ftype="html" />-->
-        </test>
-    </tests>
-
-    <help>
-
-        .. class:: infomark
-
-        **Homer annoatePeaks**
-        More information on accepted formats
-        http://biowhat.ucsd.edu/homer/ngs/annotation.html
-
-
-    </help>
-</tool>
-