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0
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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9
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3 <package name="ontologizer-jar" version="0.0.1">
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8
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4 <install version="1.0">
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5 <actions>
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15
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6 <action type="shell_command">curl --silent --show-error --output $INSTALL_DIR/ontologizer.jar http://compbio.charite.de/contao/index.php/cmdlineOntologizer.html?file=tl_files/ontologizer/cmdline/Ontologizer.jar</action>
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17
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7 <action type="set_environment">
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18
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8 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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17
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9 </action>
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8
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10 </actions>
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11 </install>
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12 <readme>
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13 ontologizer requires java and curl to be installed.
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14 </readme>
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15 </package>
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6
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16 <package name="obo-scripts" version="1.0.12">
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0
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17 <install version="1.0">
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18 <actions>
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19 <action type="shell_command">git clone http://github.com/cmungall/obo-scripts</action>
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8
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20 <action type="move_directory_files">
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21 <source_directory>./</source_directory>
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22 <destination_directory>$INSTALL_DIR</destination_directory>
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23 </action>
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8
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24 <action type="set_environment">
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25 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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26 </action>
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27 </actions>
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28 </install>
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29 <readme>
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8
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30 obo_scripts require perl to be installed.
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31 </readme>
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32 </package>
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33 </tool_dependency>
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