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1 <!DOCTYPE html>
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2 <html lang="en">
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3 <head>
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4 <meta http-equiv="X-UA-Compatible" content="IE=edge" />
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5 <meta charset="utf-8">
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6 <title>
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7 jhpoelen / obo
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8 / source /
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9 — Bitbucket
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10 </title>
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11 <link rel="icon" type="image/png" href="https://d3oaxc4q5k2d6q.cloudfront.net/m/86405223cfc3/img/favicon.png">
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12 <meta id="bb-canon-url" name="bb-canon-url" content="https://bitbucket.org">
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13
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14
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15 <link rel="stylesheet" href="https://d3oaxc4q5k2d6q.cloudfront.net/m/86405223cfc3/compressed/css/0905f4428f6e.css" type="text/css" />
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16
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17 <!--[if lt IE 9]><link rel="stylesheet" href="https://d3oaxc4q5k2d6q.cloudfront.net/m/86405223cfc3/css/aui/aui-ie.css" media="all"><![endif]-->
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18 <!--[if IE 9]><link rel="stylesheet" href="https://d3oaxc4q5k2d6q.cloudfront.net/m/86405223cfc3/css/aui/aui-ie9.css" media="all"><![endif]-->
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19 <!--[if IE]><link rel="stylesheet" href="https://d3oaxc4q5k2d6q.cloudfront.net/m/86405223cfc3/css/aui-overrides-ie.css" media="all"><![endif]-->
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20 <meta name="description" content=""/>
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21 <link rel="search" type="application/opensearchdescription+xml" href="/opensearch.xml" title="Bitbucket" />
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22
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23 <link href="/jhpoelen/obo/rss" rel="alternate nofollow" type="application/rss+xml" title="RSS feed for obo" />
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24
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25 </head>
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26 <body class="aui-layout production "
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27 >
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28 <script type="text/javascript" src="https://d3oaxc4q5k2d6q.cloudfront.net/m/86405223cfc3/compressed/js/e98deabf8a2e.js"></script>
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29 <div id="page">
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30 <div id="wrapper">
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31
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32 <header id="header" role="banner">
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33 <nav class="aui-header aui-dropdown2-trigger-group" role="navigation">
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34 <div class="aui-header-inner">
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35 <div class="aui-header-primary">
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36 <h1 class="aui-header-logo aui-header-logo-bitbucket">
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37 <a href="/" class="aui-nav-imagelink">
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38 <span class="aui-header-logo-device">Bitbucket</span>
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39 </a>
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40 </h1>
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41 <script id="repo-dropdown-template" type="text/html">
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42
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43
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44 [[#hasViewed]]
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45 <div class="aui-dropdown2-section">
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46 <strong class="viewed">Recently viewed</strong>
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47 <ul class="aui-list-truncate">
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48 [[#viewed]]
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49 <li class="[[#is_private]]private[[/is_private]][[^is_private]]public[[/is_private]] repository">
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50 <a href="[[url]]" title="[[owner]]/[[name]]" class=" aui-icon-container">
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51 <img class="repo-avatar size16" src="[[{avatar}]]" alt="[[owner]]/[[name]] avatar"/>
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52 [[owner]] / [[name]]
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53 </a>
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54 </li>
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55 [[/viewed]]
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56 </ul>
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57 </div>
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58 [[/hasViewed]]
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59 [[#hasUpdated]]
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60 <div class="aui-dropdown2-section">
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61 <strong class="updated">Recently updated</strong>
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62 <ul class="aui-list-truncate">
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63 [[#updated]]
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64 <li class="[[#is_private]]private[[/is_private]][[^is_private]]public[[/is_private]] repository">
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65 <a href="[[url]]" title="[[owner]]/[[name]]" class=" aui-icon-container">
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66 <img class="repo-avatar size16" src="[[{avatar}]]" alt="[[owner]]/[[name]] avatar"/>
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67 [[owner]] / [[name]]
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68 </a>
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69 </li>
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70 [[/updated]]
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71 </ul>
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72 </div>
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73 [[/hasUpdated]]
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74
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75 </script>
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76 <ul role="menu" class="aui-nav">
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77
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78 <li>
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79 <a href="/plans">
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80 Pricing & Signup
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81 </a>
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82 </li>
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83 <li>
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84 <a href="/whats-new">
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85 What's new
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86 </a>
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87 </li>
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88
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89 </ul>
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90 </div>
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91 <div class="aui-header-secondary">
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92 <ul role="menu" class="aui-nav">
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93 <li>
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94 <form action="/repo/all" method="get" class="aui-quicksearch">
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95 <label for="search-query" class="assistive">owner/repository</label>
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96 <input id="search-query" class="search" type="text" placeholder="owner/repository" name="name">
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97 </form>
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98 </li>
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99 <li>
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100 <a class="aui-dropdown2-trigger"aria-controls="header-help-dropdown" aria-owns="header-help-dropdown"
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101 aria-haspopup="true" data-container="#header .aui-header-inner" href="#header-help-dropdown">
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102 <span class="aui-icon aui-icon-small aui-iconfont-help">Help</span><span class="aui-icon-dropdown"></span>
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103 </a>
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104 <nav id="header-help-dropdown" class="aui-dropdown2 aui-style-default aui-dropdown2-in-header" aria-hidden="true">
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105 <div class="aui-dropdown2-section">
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106 <ul>
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107 <li>
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108 <a href="/whats-new" id="features-link">
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109 What's new
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110 </a>
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111 </li>
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112 </ul>
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113 </div>
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114 <div class="aui-dropdown2-section">
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115 <ul>
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116 <li><a href="https://confluence.atlassian.com/display/BITBUCKET/bitbucket+Documentation+Home" target="_blank">Documentation</a></li>
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117 <li><a href="https://confluence.atlassian.com/display/BITBUCKET/bitbucket+101" target="_blank">Bitbucket 101</a></li>
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118 <li><a href="https://confluence.atlassian.com/display/BBKB/Bitbucket+Knowledge+Base+Home" target="_blank">Knowledge base</a></li>
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119 </ul>
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120 </div>
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121 <div class="aui-dropdown2-section">
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122 <ul>
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123 <li><a href="https://answers.atlassian.com/tags/bitbucket/" target="_blank">Bitbucket on Atlassian Answers</a></li>
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124 <li><a href="/support">Support</a></li>
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125 </ul>
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126 </div>
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127 </nav>
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128 </li>
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129
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130 <li id="user-options">
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131 <a href="/account/signin/?next=/jhpoelen/obo/src" class="aui-nav-link login-link">Log in</a>
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132 </li>
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133
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134 </ul>
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135 </div>
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136 </div>
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137 </nav>
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138 </header>
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139 <header id="account-warning" role="banner"
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140 class="aui-message-banner warning ">
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141 <div class="center-content">
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142 <span class="aui-icon aui-icon-warning"></span>
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143 <span class="message">
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144
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145 </span>
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146 </div>
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147 </header>
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148
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149 <header id="aui-message-bar">
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150
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151 </header>
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152
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153
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154 <header id="repo-warning" role="banner" class="aui-message-banner warning">
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155 <div class="center-content">
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156 <span class="aui-icon aui-icon-warning"></span>
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157 <span class="message">
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158 </span>
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159 </div>
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160 </header>
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161 <script id="repo-warning-template" type="text/html">
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162
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163
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164
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165
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166
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167 This repository's ownership is pending transfer to <a href="/[[username]]">[[username]]</a>.
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168 Visit the <a href="/jhpoelen/obo/admin/transfer">transfer repository page</a> to view more details.
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169
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170
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171 </script>
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172 <header id="repo-header" class="subhead row">
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173 <div class="center-content">
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174 <div class="repo-summary">
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175 <a class="repo-avatar-link" href="/jhpoelen/obo">
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176 <span class="repo-avatar-container size64" title="jhpoelen/obo">
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177 <img alt="jhpoelen/obo" src="https://d3oaxc4q5k2d6q.cloudfront.net/m/86405223cfc3/img/language-avatars/default_64.png"/>
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178 </span>
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179
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180
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181 </a>
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182 <h1><a class="repo-link" href="/jhpoelen/obo">obo</a></h1>
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183 <ul class="repo-metadata clearfix">
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184 <li>
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185 <a class="user" href="/jhpoelen">
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186 <span class="icon user">User icon</span>
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187 <span>jhpoelen</span>
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188 </a>
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189 </li>
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190
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191
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192 <li class="social">
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193 <a class="follow" id="repo-follow"
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194 rel="nofollow"
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195 href="/jhpoelen/obo/follow">
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196 <span class="icon follow">Follow icon</span>
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197 <span class="text">Follow</span>
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198 </a>
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199 </li>
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200
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201 </ul>
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202 </div>
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203 <div id="repo-toolbar" class="bb-toolbar">
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204
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205 <div class="aui-buttons">
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206 <a id="repo-clone-button" class="aui-button aui-style" href="https://bitbucket.org/jhpoelen/obo">
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207 <span class="icon clone">Clone icon</span>
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208 <span>Clone</span>
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209 <span class="aui-icon-dropdown"></span>
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210 </a>
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211 <a id="fork-button" class="aui-button aui-style"
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212 href="/jhpoelen/obo/fork">
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213 <span class="icon fork">Fork icon</span>
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214 <span>Fork</span>
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215 </a>
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216 </div>
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217 <div class="aui-buttons">
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218 <a id="compare-button" class="aui-button aui-style"
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219 href="/jhpoelen/obo/compare">
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220 <span class="icon compare">Compare icon</span>
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221 <span>Compare</span>
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222 </a>
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223 <a id="pull-request-button" class="aui-button aui-style"
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224 href="/jhpoelen/obo/pull-request/new">
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225 <span class="icon pull-request">Pull request icon</span>
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226 <span>Pull request</span>
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227 </a>
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228 </div>
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229
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230
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231
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232 <div id="repo-clone-dialog" class="clone-dialog hidden">
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233
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234 <div class="clone-url">
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235 <div class="aui-buttons">
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236 <a href="https://bitbucket.org/jhpoelen/obo"
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237 class="aui-button aui-style aui-dropdown2-trigger" aria-haspopup="true"
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238 aria-owns="clone-url-dropdown-header">
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239 <span class="dropdown-text">HTTPS</span>
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240 </a>
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241 <div id="clone-url-dropdown-header" class="aui-dropdown2 aui-style-default">
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242 <ul class="aui-list-truncate">
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243 <li>
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244 <a href="https://bitbucket.org/jhpoelen/obo"
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245
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246 data-command="hg clone https://bitbucket.org/jhpoelen/obo"
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247
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248 class="item-link https">HTTPS
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249 </a>
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250 </li>
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251 <li>
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252 <a href="ssh://hg@bitbucket.org/jhpoelen/obo"
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253
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254 data-command="hg clone ssh://hg@bitbucket.org/jhpoelen/obo"
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255
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256 class="item-link ssh">SSH
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257 </a>
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258 </li>
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259 </ul>
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260 </div>
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261 <input type="text" readonly="readonly" value="hg clone https://bitbucket.org/jhpoelen/obo">
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262 </div>
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263
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264 <p>Need help cloning? Visit
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265 <a href="https://confluence.atlassian.com/x/cgozDQ" target="_blank">Bitbucket 101</a>.</p>
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266
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267 </div>
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268
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269
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270
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271
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272
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273
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274 <div class="clone-in-sourcetree"
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275 data-https-url="https://bitbucket.org/jhpoelen/obo"
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276 data-ssh-url="ssh://hg@bitbucket.org/jhpoelen/obo">
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277 <p><button class="aui-button aui-style aui-button-primary">Clone in SourceTree</button></p>
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278
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279 <p><a href="http://www.sourcetreeapp.com" target="_blank">SourceTree</a>
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280 is a free Mac client by Atlassian for Git, Mercurial and Subversion.</p>
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281 </div>
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282
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283
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284 </div>
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285
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286 </div>
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287 </div>
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288 <div class="clearfix"></div>
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289 </header>
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290 <nav id="repo-tabs" class="aui-navgroup aui-navgroup-horizontal aui-navgroup-horizontal-roomy">
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291 <div class="aui-navgroup-inner">
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292 <div class="aui-navgroup-primary">
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293 <ul class="aui-nav">
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294
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295 <li>
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296 <a href="/jhpoelen/obo/overview" id="repo-overview-link">Overview</a>
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297 </li>
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298
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299
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300 <li class="aui-nav-selected">
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301 <a href="/jhpoelen/obo/src" id="repo-source-link">Source</a>
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302 </li>
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303
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304
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305 <li>
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306 <a href="/jhpoelen/obo/commits" id="repo-commits-link">
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307 Commits
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308 </a>
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309 </li>
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310
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311
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312 <li>
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313 <a href="/jhpoelen/obo/pull-requests" id="repo-pullrequests-link">
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314 Pull requests
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315
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316
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317
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318 </a>
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319 </li>
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320
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321
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322
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323
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324 <li id="issues-tab" class="
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325
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326 hidden
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327
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328 ">
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329 <a href="/jhpoelen/obo/issues?status=new&status=open" id="repo-issues-link">
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330 Issues
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331
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332
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333
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334 </a>
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335 </li>
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336 <li id="wiki-tab" class="
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337
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338 hidden
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339
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340 ">
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341 <a href="/jhpoelen/obo/wiki" id="repo-wiki-link">Wiki</a>
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342 </li>
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343
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344 <li>
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345 <a href="/jhpoelen/obo/downloads" id="repo-downloads-link">
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346 Downloads
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347
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348
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349
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350 </a>
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351 </li>
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352
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353 </ul>
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354 </div>
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355 <div class="aui-navgroup-secondary">
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356 <ul class="aui-nav">
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357
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358 </ul>
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359 </div>
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360 </div>
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361 </nav>
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362
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363 <div id="content" role="main">
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364
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365 <div id="repo-content">
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366
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367
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368 <div id="source-container">
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369
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370
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371
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372
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373 <header id="source-path">
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374
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375 <div class="labels labels-csv">
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376
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377 <div class="aui-buttons">
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378 <button data-branches-tags-url="/api/1.0/repositories/jhpoelen/obo/branches-tags"
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379 class="aui-button aui-style branch-dialog-trigger" title="default">
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380
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381
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382 <span class="branch icon">Branch</span>
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383
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384 <span class="name">default</span>
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385
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386 <span class="aui-icon-dropdown"></span>
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387 </button>
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388 </div>
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389
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390 </div>
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391
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392
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393 <h1>
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394 <a href="/jhpoelen/obo/src/aa5dc8850678?at=default"
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395 class="pjax-trigger" title="">obo</a> /
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396
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397
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398
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403 </h1>
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407
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408 <div class="clearfix"></div>
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409 </header>
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410
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411
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412 <table id="source-list" class="aui bb-list">
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413 <thead>
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414 <tr>
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415 <th class="name">Filename</th>
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416 <th class="size">Size</th>
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417 <th class="date">Date modified</th>
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418 <th class="text">Message</th>
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419
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420 </tr>
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421 </thead>
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422 <tbody>
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423
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424
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425 <tr class="iterable-item">
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426
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427 <td class="name dirname" colspan="4">
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428 <a href="/jhpoelen/obo/src/aa5dc88506780fecccd36ac8f7a5fd6759ad8cab/test-data?at=default" title=""
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429 class="pjax-trigger execute">test-data</a>
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430 </td>
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431
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432
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433 </tr>
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434
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435
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436 <tr class="iterable-item">
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437 <td class="name filename">
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438 <div>
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439 <a href="/jhpoelen/obo/src/aa5dc88506780fecccd36ac8f7a5fd6759ad8cab/README?at=default"
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440 title="README"
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441 class="pjax-trigger execute">README</a>
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442 </div>
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443 </td>
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444
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445
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446 <td class="size">
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447 <div>
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448 418 B
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449 </div>
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450 </td>
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451
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452
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453 <td class="date">
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454 <div>
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455 <time datetime="2013-02-07T00:52:02+00:00" data-title="true">21 hours ago</time>
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456 </div>
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457 </td>
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458 <td class="text">
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459 <div>
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460
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461 First commit.
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462
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463 </div>
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464 </td>
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465
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466
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467
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468 </tr>
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469
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470 <tr class="iterable-item">
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471 <td class="name filename">
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472 <div>
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473 <a href="/jhpoelen/obo/src/aa5dc88506780fecccd36ac8f7a5fd6759ad8cab/fetch_ontology.xml?at=default"
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474 title="fetch_ontology.xml"
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475 class="pjax-trigger execute">fetch_ontology.xml</a>
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476 </div>
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477 </td>
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478
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479
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480 <td class="size">
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481 <div>
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482 846 B
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483 </div>
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484 </td>
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485
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486
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487 <td class="date">
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488 <div>
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489 <time datetime="2013-02-07T00:52:02+00:00" data-title="true">21 hours ago</time>
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490 </div>
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491 </td>
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492 <td class="text">
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493 <div>
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494
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495 First commit.
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496
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497 </div>
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498 </td>
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499
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500
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501
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502 </tr>
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503
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504 <tr class="iterable-item">
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505 <td class="name filename">
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506 <div>
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507 <a href="/jhpoelen/obo/src/aa5dc88506780fecccd36ac8f7a5fd6759ad8cab/tool_dependencies.xml?at=default"
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508 title="tool_dependencies.xml"
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509 class="pjax-trigger execute">tool_dependencies.xml</a>
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510 </div>
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511 </td>
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512
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513
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514 <td class="size">
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515 <div>
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516 858 B
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517 </div>
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518 </td>
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519
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520
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521 <td class="date">
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522 <div>
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523 <time datetime="2013-02-07T00:52:02+00:00" data-title="true">21 hours ago</time>
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524 </div>
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525 </td>
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526 <td class="text">
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527 <div>
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528
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529 First commit.
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530
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531 </div>
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532 </td>
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533
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534
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535
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536 </tr>
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537
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538
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539 </tbody>
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540 </table>
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541
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542 <section id="readme">
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543 <article class="readme file">
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544 <pre class="plaintext">The following libraries need to be installed to use the obo tools:
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545
|
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546 # termfinder needs g++ and other build tools
|
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547 sudo apt-get $APT_OPTS install build-essential
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548
|
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549 # perl dbi / perl DBD::mysql
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550 sudo apt-get $APT_OPTS install libdbi-perl libdbd-mysql-perl
|
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551
|
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552 # GO:TermFinder needs dependencies GraphViz and GD graphics libraries
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553 sudo apt-get $APT_OPTS install libgraphviz-perl
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554 sudo apt-get $APT_OPTS install libgd-gd2-perl
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555 </pre>
|
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556 </article>
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557 </section>
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558
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559
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560
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561
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562 <div class="mask"></div>
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563
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564
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565
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566 <script id="branch-dialog-template" type="text/html">
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567
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568
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569 <div class="tabbed-filter-widget branch-dialog">
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570 <div class="tabbed-filter">
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571 <input placeholder="Filter branches" class="filter-box" autosave="branch-dropdown-2118082" type="text">
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572 [[^ignoreTags]]
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573 <div class="aui-tabs horizontal-tabs aui-tabs-disabled filter-tabs">
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574 <ul class="tabs-menu">
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575 <li class="menu-item active-tab"><a href="#branches">Branches</a></li>
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576 <li class="menu-item"><a href="#tags">Tags</a></li>
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577 </ul>
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578 </div>
|
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579 [[/ignoreTags]]
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580 </div>
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581
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582 <div class="tab-pane active-pane" id="branches" data-filter-placeholder="Filter branches">
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583 <ol class="filter-list">
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584 <li class="empty-msg">No matching branches</li>
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585 [[#branches]]
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586 [[#hasMultipleHeads]]
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587 [[#heads]]
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588 <li class="comprev filter-item">
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589 <a href="/jhpoelen/obo/src/[[changeset]]/?at=[[safeName]]"
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590 title="[[name]]">
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591 [[name]] ([[shortChangeset]])
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592 </a>
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593 </li>
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594 [[/heads]]
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595 [[/hasMultipleHeads]]
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596 [[^hasMultipleHeads]]
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597 <li class="comprev filter-item">
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598 <a href="/jhpoelen/obo/src/[[changeset]]/?at=[[safeName]]" title="[[name]]">
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599 [[name]]
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600 </a>
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601 </li>
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602 [[/hasMultipleHeads]]
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603 [[/branches]]
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604 </ol>
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|
605 </div>
|
|
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606 <div class="tab-pane" id="tags" data-filter-placeholder="Filter tags">
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607 <ol class="filter-list">
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608 <li class="empty-msg">No matching tags</li>
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609 [[#tags]]
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610 <li class="comprev filter-item">
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611 <a href="/jhpoelen/obo/src/[[changeset]]/?at=[[safeName]]" title="[[name]]">
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|
612 [[name]]
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613 </a>
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614 </li>
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615 [[/tags]]
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616 </ol>
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617 </div>
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618
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619 </div>
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620
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621 </script>
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622
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623
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624
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625 </div>
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626
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627
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628 </div>
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629
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630
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631
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632 <form id="file-search-form" action="#"
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633 data-revision="aa5dc88506780fecccd36ac8f7a5fd6759ad8cab"
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634 data-branch="default">
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635 <input type="text" id="file-search-query" class="loading">
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636 <div id="filtered-files"></div>
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637 <div class="tip"><em>Tip:</em> Filter by directory path e.g. <strong>/media app.js</strong> to search for public<strong>/media/app.js</strong>.</div>
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|
|
638 <div class="tip"><em>Tip:</em> Use camelCasing e.g. <strong>ProjME</strong> to search for <strong>ProjectModifiedE</strong>vent.java.</div>
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|
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639 <div class="tip"><em>Tip:</em> Filter by extension type e.g. <strong>/repo .js</strong> to search for all <strong>.js</strong> files in the <strong>/repo</strong> directory.</div>
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640 <div class="tip"><em>Tip:</em> Separate your search with spaces e.g. <strong>/ssh pom.xml</strong> to search for src<strong>/ssh/pom.xml</strong>.</div>
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641 <div class="tip"><em>Tip:</em> Use ↑ and ↓ arrow keys to navigate and <strong>return</strong> to view the file.</div>
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642 <div class="tip"><em>Tip:</em> You can also navigate files with <strong>Ctrl+j</strong> <em>(next)</em> and <strong>Ctrl+k</strong> <em>(previous)</em> and view the file with <strong>Ctrl+o</strong>.</div>
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643 <script id="filtered-files-template" type="text/html">
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644
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645
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646 <table class="aui bb-list">
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647 <thead>
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648 <tr class="assistive">
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649 <th class="name">Filename</th>
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650 </tr>
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651 </thead>
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|
652 <tbody>
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|
653 [[#files]]
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654 <tr class="iterable-item">
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|
655 <td class="name [[#isDirectory]]directory[[/isDirectory]]">
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|
656 <a href="/jhpoelen/obo/src/[[node]]/[[name]][[#branch]]?at=[[branch]][[/branch]]"
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657 title="[[name]]" class="execute" tabindex="-1">
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658 [[&highlightedName]]
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659 </a>
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660 </td>
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661 </tr>
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662 [[/files]]
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663 </tbody>
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664 </table>
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665
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666 </script>
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667 </form>
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668
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669
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670
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671 </div>
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672 </div>
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|
673 <footer id="footer" role="contentinfo">
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674 <section class="footer-body">
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675 <ul>
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676 <li><a href="http://blog.bitbucket.org">Blog</a></li>
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677 <li><a href="//bitbucket.org/site/master/issues/new">Report a bug</a></li>
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678 <li><a href="/support">Support</a></li>
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679 <li><a href="http://confluence.atlassian.com/display/BITBUCKET">Documentation</a></li>
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680 <li><a href="http://confluence.atlassian.com/x/IYBGDQ">API</a></li>
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681 <li><a href="http://groups.google.com/group/bitbucket-users">Forum</a></li>
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682 <li><a href="http://status.bitbucket.org/">Server status</a></li>
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683 <li><a href="http://www.atlassian.com/hosted/terms.jsp">Terms of service</a></li>
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684 <li><a href="http://www.atlassian.com/about/privacy.jsp">Privacy policy</a></li>
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685 </ul>
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686 <ul>
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687 <li><a href="http://git-scm.com/">Git 1.7.10.3</a></li>
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688 <li><a href="http://mercurial.selenic.com/">Mercurial 2.2.2</a></li>
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689 <li><a href="https://www.djangoproject.com/">Django 1.3.1</a></li>
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690 <li><a href="http://www.python.org/">Python 2.7.3</a></li>
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691 <li><a href="#">86405223cfc3 / 86405223cfc3 @ bitbucket20</a></li>
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692 </ul>
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693 </section>
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694 </footer>
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695 </div>
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696
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697 <script type="text/javascript" src="https://d3oaxc4q5k2d6q.cloudfront.net/m/86405223cfc3/compressed/js/30dafea7d607.js"></script>
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698
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|
|
699 <!-- This script exists purely for the benefit of our selenium tests -->
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700 <script>
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701 setTimeout(function () {
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702 BB.JsLoaded = true;
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703 }, 3000);
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704 </script>
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705
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706
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707
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|
708 <script>
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709 (function (window) {
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710 // Base URL to use for non-CNAME URLs.
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711 BB.baseUrl = 'https://bitbucket.org';
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712
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713 BB.images = {
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718 BB.repo || (BB.repo = {});
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719
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720 BB.repo.id = 2118082;
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721 BB.repo.scm = 'hg';
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722
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723
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724 BB.repo.language = null;
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725 BB.repo.pygmentsLanguage = null;
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726
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727
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728 BB.repo.slug = 'obo';
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729
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730
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731 BB.repo.owner = {};
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732 BB.repo.owner.username = 'jhpoelen';
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733 BB.repo.owner.is_team = false;
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734
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735
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736 BB.repo.creator = {};
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737 BB.repo.creator.username = 'jhpoelen';
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738
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739 // Coerce `BB.repo` to a string to get
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740 // "davidchambers/mango" or whatever.
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741 BB.repo.toString = function () {
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742 return BB.cname ? this.slug : '{owner.username}/{slug}'.format(this);
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744
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745 BB.changeset = 'aa5dc88506780fecccd36ac8f7a5fd6759ad8cab'
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746
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747
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748
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754
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755
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756 <script>
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757 // Bitbucket Google Analytics
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758 // NOTE: these will not fire in development. In debug mode it just logs them to console.
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759 (function (window) {
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760 // Track the main pageview to the Bitbucket GA account.
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765
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766
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767
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768
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769
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771
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772
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774 var ga = document.createElement('script');
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780 </script>
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781
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782
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783
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784 </body>
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785 </html>
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