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changeset 2:e71204d5e03c draft

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Uploaded
author jorrit
date Thu, 07 Feb 2013 16:57:42 -0500
parents 569830319099
children 0c42bebab126
files src
diffstat 1 files changed, 785 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/src	Thu Feb 07 16:57:42 2013 -0500
@@ -0,0 +1,785 @@
+<!DOCTYPE html>
+<html lang="en">
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+  <title>
+  jhpoelen / obo 
+  / source  /  
+ &mdash; Bitbucket
+</title>
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+</span>
+
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+        <ul class="repo-metadata clearfix">
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+            <span>Compare</span>
+          </a>
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+        
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+    </a>
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+        <ul class="aui-nav">
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+              <a href="/jhpoelen/obo/src" id="repo-source-link">Source</a>
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+    
+  </div>
+  
+  
+  <h1>
+    <a href="/jhpoelen/obo/src/aa5dc8850678?at=default"
+       class="pjax-trigger" title="">obo</a> /
+    
+      
+        
+          
+        
+      
+    
+  </h1>
+  
+    
+    
+  
+  <div class="clearfix"></div>
+</header>
+
+
+  <table id="source-list" class="aui bb-list">
+    <thead>
+      <tr>
+        <th class="name">Filename</th>
+        <th class="size">Size</th>
+        <th class="date">Date modified</th>
+        <th class="text">Message</th>
+      
+      </tr>
+    </thead>
+    <tbody>
+    
+    
+      <tr class="iterable-item">
+        
+        <td class="name dirname" colspan="4">
+          <a href="/jhpoelen/obo/src/aa5dc88506780fecccd36ac8f7a5fd6759ad8cab/test-data?at=default" title=""
+             class="pjax-trigger execute">test-data</a>
+        </td>
+        
+      
+      </tr>
+    
+    
+      <tr class="iterable-item">
+        <td class="name filename">
+          <div>
+            <a href="/jhpoelen/obo/src/aa5dc88506780fecccd36ac8f7a5fd6759ad8cab/README?at=default"
+               title="README"
+               class="pjax-trigger execute">README</a>
+          </div>
+        </td>
+        
+        
+        <td class="size">
+          <div>
+            418 B
+          </div>
+        </td>
+        
+          
+            <td class="date">
+              <div>
+                <time datetime="2013-02-07T00:52:02+00:00" data-title="true">21 hours ago</time>
+              </div>
+            </td>
+            <td class="text">
+              <div>
+                
+                  First commit.
+                
+              </div>
+            </td>
+          
+        
+      
+      </tr>
+    
+      <tr class="iterable-item">
+        <td class="name filename">
+          <div>
+            <a href="/jhpoelen/obo/src/aa5dc88506780fecccd36ac8f7a5fd6759ad8cab/fetch_ontology.xml?at=default"
+               title="fetch_ontology.xml"
+               class="pjax-trigger execute">fetch_ontology.xml</a>
+          </div>
+        </td>
+        
+        
+        <td class="size">
+          <div>
+            846 B
+          </div>
+        </td>
+        
+          
+            <td class="date">
+              <div>
+                <time datetime="2013-02-07T00:52:02+00:00" data-title="true">21 hours ago</time>
+              </div>
+            </td>
+            <td class="text">
+              <div>
+                
+                  First commit.
+                
+              </div>
+            </td>
+          
+        
+      
+      </tr>
+    
+      <tr class="iterable-item">
+        <td class="name filename">
+          <div>
+            <a href="/jhpoelen/obo/src/aa5dc88506780fecccd36ac8f7a5fd6759ad8cab/tool_dependencies.xml?at=default"
+               title="tool_dependencies.xml"
+               class="pjax-trigger execute">tool_dependencies.xml</a>
+          </div>
+        </td>
+        
+        
+        <td class="size">
+          <div>
+            858 B
+          </div>
+        </td>
+        
+          
+            <td class="date">
+              <div>
+                <time datetime="2013-02-07T00:52:02+00:00" data-title="true">21 hours ago</time>
+              </div>
+            </td>
+            <td class="text">
+              <div>
+                
+                  First commit.
+                
+              </div>
+            </td>
+          
+        
+      
+      </tr>
+    
+     
+    </tbody>
+  </table>
+  
+    <section id="readme">
+      <article class="readme file">
+        <pre class="plaintext">The following libraries need to be installed to use the obo tools:
+
+# termfinder needs g++ and other build tools
+sudo apt-get $APT_OPTS install build-essential
+
+# perl dbi / perl DBD::mysql 
+sudo apt-get $APT_OPTS install libdbi-perl libdbd-mysql-perl
+
+# GO:TermFinder needs dependencies GraphViz and GD graphics libraries 
+sudo apt-get $APT_OPTS install libgraphviz-perl
+sudo apt-get $APT_OPTS install libgd-gd2-perl
+</pre>
+      </article>
+    </section>
+  
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+      <td class="name [[#isDirectory]]directory[[/isDirectory]]">
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