Mercurial > repos > jjohnson > snpsift_dbnsfp
changeset 2:c56e27adfbff
Add a build field in the tool-data to allow for filtering on genome build
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Mon, 10 Nov 2014 09:45:26 -0600 |
| parents | 76892da053f2 |
| children | b5e03b2cb813 |
| files | snpSift_dbnsfp.xml tool-data/snpsift_dbnsfp.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 3 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/snpSift_dbnsfp.xml Thu Oct 23 05:58:20 2014 -0500 +++ b/snpSift_dbnsfp.xml Mon Nov 10 09:45:26 2014 -0600 @@ -31,7 +31,7 @@ <param name="dbnsfp" type="select" label="Genome"> <options from_data_table="snpsift_dbnsfp"> <column name="name" index="1"/> - <column name="value" index="2"/> + <column name="value" index="3"/> </options> </param> <param name="annotations" type="select" multiple="true" display="checkboxes" label="Annotate with">
--- a/tool-data/snpsift_dbnsfp.loc.sample Thu Oct 23 05:58:20 2014 -0500 +++ b/tool-data/snpsift_dbnsfp.loc.sample Mon Nov 10 09:45:26 2014 -0600 @@ -1,2 +1,3 @@ -#id desc path annotations -#GRCh37_dbNSFP2.1 GRCh37 dbNSFP2.1 /depot/snpeff/ SIFT_pred,Uniprot_acc +#id build description path annotations +#GRCh37_dbNSFP2.4 GRCh37 GRCh37 dbNSFP2.4 /depot/snpeff/ SIFT_pred,Uniprot_acc +#GRCh38_dbNSFP2.7 GRCh38 GRCh38 dbNSFP2.7 /depot/snpeff/ SIFT_pred,Uniprot_acc
--- a/tool_data_table_conf.xml.sample Thu Oct 23 05:58:20 2014 -0500 +++ b/tool_data_table_conf.xml.sample Mon Nov 10 09:45:26 2014 -0600 @@ -1,6 +1,6 @@ <tables> <table name="snpsift_dbnsfp" comment_char="#"> - <columns>dbkey, name, value, annotations</columns> + <columns>dbkey, build, name, value, annotations</columns> <file path="tool-data/snpsift_dbnsfp.loc" /> </table> </tables>