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view tool_dependencies.xml @ 4:a82400332451

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Use shear_wrapper.py to generate reference indexes when needed
author Jim Johnson <jj@umn.edu>
date Tue, 16 Jul 2013 12:38:48 -0500
parents ea76da1e7281
children aaaa5a071ff0
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<?xml version="1.0"?>
<tool_dependency>
    <package name="samtools" version="0.1.18">
        <repository changeset_revision="5f7ec5048224" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="bwa" version="0.6.2">
        <repository changeset_revision="8be5fbfc1548" name="package_bwa_0_6_2" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="kent" version="latest">
        <repository changeset_revision="b05b788e3989" name="package_kent" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="crest" version="1.0.1">
        <repository changeset_revision="89a9d6ce7f96" name="package_crest_1_0_1" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
          <readme>
CREST requires: 
  Bioperl package Bio::DB:Sam  
  cap3 which only has binary executable downloads from:   http://seq.cs.iastate.edu/cap3.html
          </readme>
    </package>
    <package name="shear" version="0.1.2">
        <repository changeset_revision="c2ab94f12a7a" name="package_shear_0_1_2" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>

</tool_dependency>