Mercurial > repos > jjohnson > shear
comparison tool_dependencies.xml @ 4:a82400332451
Use shear_wrapper.py to generate reference indexes when needed
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 16 Jul 2013 12:38:48 -0500 |
| parents | ea76da1e7281 |
| children | aaaa5a071ff0 |
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| 3:630532975fa9 | 4:a82400332451 |
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| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 http://testtoolshed.g2.bx.psu.edu/ | |
| 4 <package name="samtools" version="0.1.18"> | 3 <package name="samtools" version="0.1.18"> |
| 5 <repository changeset_revision="5f7ec5048224" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="5f7ec5048224" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 6 </package> | 5 </package> |
| 7 <package name="bwa" version="0.6.2"> | 6 <package name="bwa" version="0.6.2"> |
| 8 <repository changeset_revision="8be5fbfc1548" name="package_bwa_0_6_2" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 7 <repository changeset_revision="8be5fbfc1548" name="package_bwa_0_6_2" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 10 <package name="kent" version="latest"> | 9 <package name="kent" version="latest"> |
| 11 <repository changeset_revision="b05b788e3989" name="package_kent" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 10 <repository changeset_revision="b05b788e3989" name="package_kent" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 12 </package> | 11 </package> |
| 13 <package name="crest" version="1.0.1"> | 12 <package name="crest" version="1.0.1"> |
| 14 <repository changeset_revision="89a9d6ce7f96" name="package_crest_1_0_1" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 13 <repository changeset_revision="89a9d6ce7f96" name="package_crest_1_0_1" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 14 <readme> | |
| 15 CREST requires: | |
| 16 Bioperl package Bio::DB:Sam | |
| 17 cap3 which only has binary executable downloads from: http://seq.cs.iastate.edu/cap3.html | |
| 18 </readme> | |
| 15 </package> | 19 </package> |
| 16 <package name="shear" version="0.1.2"> | 20 <package name="shear" version="0.1.2"> |
| 17 <repository changeset_revision="c2ab94f12a7a" name="package_shear_0_1_2" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 21 <repository changeset_revision="c2ab94f12a7a" name="package_shear_0_1_2" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 18 </package> | 22 </package> |
| 19 | 23 |