Mercurial > repos > jjohnson > peptideshaker
changeset 3:8cf04d7a6683 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 01cd2c9b3fb3157202628579311943601218eb0b-dirty
| author | jjohnson |
|---|---|
| date | Thu, 12 Jul 2018 09:01:01 -0400 |
| parents | eea7e945f479 |
| children | b4b1780ef40f |
| files | macros.xml |
| diffstat | 1 files changed, 19 insertions(+), 0 deletions(-) [+] |
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--- a/macros.xml Thu Jul 12 08:42:58 2018 -0400 +++ b/macros.xml Thu Jul 12 09:01:01 2018 -0400 @@ -148,6 +148,25 @@ </param> --> </repeat> + <repeat name="user_enzymes" min="0" title="User Defined Enzymes"> + <param name="enzyme_name" type="text" value="" label="enzyme_name"> + <validator type="empty_field" message="Enzyme must be geiven a name"/> + </param> + <param name="cleave_before" type="text" value="" optional="true" label="cleave_before AAs"> + <validator type="regex" message="single letter amino acid codes separated by comma">^([ACDEFGHILKMNPQRSTVWY](,[ACDEFGHILKMNPQRSTVWY])*)?$</validator> + </param> + <param name="cleave_after" type="text" value="" optional="true" label="cleave_after AAs"> + <validator type="regex" message="single letter amino acid codes separated by comma">^([ACDEFGHILKMNPQRSTVWY](,[ACDEFGHILKMNPQRSTVWY])*)?$</validator> + </param> + <param name="restriction_before" type="text" value="" optional="true" label="restriction_before AAs"> + <validator type="regex" message="single letter amino acid codes separated by comma">^([ACDEFGHILKMNPQRSTVWY](,[ACDEFGHILKMNPQRSTVWY])*)?$</validator> + </param> + <param name="restriction_after" type="text" value="" optional="true" label="restriction_after AAs"> + <validator type="regex" message="single letter amino acid codes separated by comma">^([ACDEFGHILKMNPQRSTVWY](,[ACDEFGHILKMNPQRSTVWY])*)?$</validator> + </param> + <param name="missed_cleavages" type="integer" value="2" label="Maximum Missed Cleavages" + help="Allow peptides to contain up to this many missed enzyme cleavage sites."/> + </repeat> </when> <when value="1"/> <when value="2"/>