# HG changeset patch
# User jjohnson
# Date 1531400461 14400
# Node ID 8cf04d7a66833bc5474eb46e8ae1ab0eff6fcc9f
# Parent  eea7e945f479b5080ab88970a6412d160ad0a65c
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 01cd2c9b3fb3157202628579311943601218eb0b-dirty

diff -r eea7e945f479 -r 8cf04d7a6683 macros.xml
--- a/macros.xml	Thu Jul 12 08:42:58 2018 -0400
+++ b/macros.xml	Thu Jul 12 09:01:01 2018 -0400
@@ -148,6 +148,25 @@
                         </param>
                         -->
                     </repeat>
+                    <repeat name="user_enzymes" min="0" title="User Defined Enzymes">
+                        <param name="enzyme_name" type="text" value="" label="enzyme_name">
+                            <validator type="empty_field" message="Enzyme must be geiven a name"/>
+                        </param>
+                        <param name="cleave_before" type="text" value="" optional="true" label="cleave_before AAs">
+                            <validator type="regex" message="single letter amino acid codes separated by comma">^([ACDEFGHILKMNPQRSTVWY](,[ACDEFGHILKMNPQRSTVWY])*)?$</validator>
+                        </param>
+                        <param name="cleave_after" type="text" value="" optional="true" label="cleave_after AAs">
+                            <validator type="regex" message="single letter amino acid codes separated by comma">^([ACDEFGHILKMNPQRSTVWY](,[ACDEFGHILKMNPQRSTVWY])*)?$</validator>
+                        </param>
+                        <param name="restriction_before" type="text" value="" optional="true" label="restriction_before AAs">
+                            <validator type="regex" message="single letter amino acid codes separated by comma">^([ACDEFGHILKMNPQRSTVWY](,[ACDEFGHILKMNPQRSTVWY])*)?$</validator>
+                        </param>
+                        <param name="restriction_after" type="text" value="" optional="true" label="restriction_after AAs">
+                            <validator type="regex" message="single letter amino acid codes separated by comma">^([ACDEFGHILKMNPQRSTVWY](,[ACDEFGHILKMNPQRSTVWY])*)?$</validator>
+                        </param>
+                        <param name="missed_cleavages" type="integer" value="2" label="Maximum Missed Cleavages"
+                            help="Allow peptides to contain up to this many missed enzyme cleavage sites."/>
+                    </repeat>
                 </when>
                 <when value="1"/>
                 <when value="2"/>