Mercurial > repos > jjohnson > package_gmap_2013_05_09

changeset 1:8bacc25e2023

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Set prefix for configure to INSTALL_DIR
author Jim Johnson <jj@umn.edu>
date Thu, 06 Jun 2013 13:51:03 -0500
parents 03bb09b717ae
children f59058e92ed7
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jun 05 16:26:25 2013 -0400
+++ b/tool_dependencies.xml	Thu Jun 06 13:51:03 2013 -0500
@@ -4,13 +4,9 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url" target_filename="gmap-2013-05-09.tar.gz">http://research-pub.gene.com/gmap/src/gmap-gsnap-2013-05-09.tar.gz</action>
-                <action type="shell_command"> ./configure --prefix=`pwd` --with-gmapdb=$INSTALL_DIR/gmapdb</action>
+                <action type="shell_command"> ./configure --prefix=$INSTALL_DIR --with-gmapdb=$INSTALL_DIR/gmapdb</action>
                 <action type="shell_command">make</action>
                 <action type="shell_command">make install</action>
-                <action type="move_directory_files">
-                    <source_directory>bin</source_directory>
-                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
-                </action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>