# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1370544663 18000
# Node ID 8bacc25e2023f28de22dbc8d243847838ec42798
# Parent  03bb09b717ae76c89cdec30cb3b99e956bf4cd9c
Set prefix for configure to INSTALL_DIR

diff -r 03bb09b717ae -r 8bacc25e2023 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jun 05 16:26:25 2013 -0400
+++ b/tool_dependencies.xml	Thu Jun 06 13:51:03 2013 -0500
@@ -4,13 +4,9 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url" target_filename="gmap-2013-05-09.tar.gz">http://research-pub.gene.com/gmap/src/gmap-gsnap-2013-05-09.tar.gz</action>
-                <action type="shell_command"> ./configure --prefix=`pwd` --with-gmapdb=$INSTALL_DIR/gmapdb</action>
+                <action type="shell_command"> ./configure --prefix=$INSTALL_DIR --with-gmapdb=$INSTALL_DIR/gmapdb</action>
                 <action type="shell_command">make</action>
                 <action type="shell_command">make install</action>
-                <action type="move_directory_files">
-                    <source_directory>bin</source_directory>
-                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
-                </action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>