| 2012-12-28 |
Jim Johnson |
Remove thread options from base_recalibrator.xml
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| 2012-12-28 |
Jim Johnson |
Fix base_recalibrator.xml option: no_standard_covs
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| 2012-12-28 |
Jim Johnson |
remove thread options from indel_realigner.xml
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| 2012-12-28 |
Jim Johnson |
remove thread options from realigner_target_creator.xml
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| 2012-12-20 |
Jim Johnson |
Update tool_dependencies to GATK v 2.3
draft
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| 2012-11-15 |
Jim Johnson |
Many fixes to haplotype_caller
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| 2012-11-15 |
Jim Johnson |
base_recalibrator out_puts gatk_report
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| 2012-11-15 |
Jim Johnson |
Update tool_dependecies to GenomeAnalysisTKLite-2.2-8-g99996f2.tar.bz2
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| 2012-11-08 |
Jim Johnson |
Remove unneeded params
draft
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| 2012-11-08 |
Jim Johnson |
Fix output filters
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| 2012-11-08 |
Jim Johnson |
Add help to HaplotypeCaller
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| 2012-11-08 |
Jim Johnson |
Add HaplotypeCaller
draft
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| 2012-11-06 |
Jim Johnson |
Comment out site options from reduce_reads.xml
draft
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| 2012-11-06 |
Jim Johnson |
Fix dir path to GenomeAnalysisTKLite.jar
draft
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| 2012-11-06 |
Jim Johnson |
Update tool_dependencies.xml
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| 2012-11-06 |
Jim Johnson |
Cleanup reduce_reads.xml
draft
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| 2012-11-06 |
Jim Johnson |
ReduceReads added
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| 2012-11-02 |
Jim Johnson |
Quote the tool_dependencies.xml GATK2_SITE_OPTIONS action text
draft
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| 2012-11-01 |
Jim Johnson |
tool_dependencies.xml - fix set_environment
draft
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| 2012-11-01 |
Jim Johnson |
tool_dependencies.xml - fix move_file and add symlink
draft
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| 2012-11-01 |
Jim Johnson |
tool_dependencies.xml - fix move_file and add symlink
draft
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| 2012-11-01 |
Jim Johnson |
Fix typo in unified_genotyper.xml, add dir path in tool_dependencies.xml
draft
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| 2012-11-01 |
jjohnson |
Uploaded
draft
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